CX078057
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11 Identity = 53/194 (27.32%), Postives = 85/194 (43.81%), Query Frame = 1 Query: 31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTE 612 R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL ++V+I K+ + GK++E P +E EAP E Sbjct: 52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKVVEA--------------PVEEAAVEAPVE 217
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11 Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 1 Query: 22 LKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507 L R+ E+SL DL NE ++ + + V G N +T F G + T + L+S +R+ + I +DV+T D F +R+ + T V+ Y +T +IR KM +I+ A V + +G +I ++PL+ V I K ++L+ K Sbjct: 49 LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLKRVEIFKSEVLEFGK 201
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11 Identity = 44/164 (26.83%), Postives = 79/164 (48.17%), Query Frame = 1 Query: 16 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507 E + R + +LG+L N+ K+ + DV T+F T D LRSL R+ + ++A+V V TTD++ +++ + +T T A SQ + IR M +++ AA L++ + + I +IYPL+ V I+K ++ +P+ Sbjct: 38 EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLRRVEIQKTRLQASPE 192
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11 Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 1 Query: 31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 606 R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F LR+ + T A+ +IR KM +I+ A V + +G +I ++PL ++V+I K+ + GK +E V+ A E + EAP Sbjct: 52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKAVE----------APVEEAAAEEVAEAP 219
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_SULSO (30S ribosomal protein S3Ae OS=Sulfolobus solfataricus GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11 Identity = 48/167 (28.74%), Postives = 77/167 (46.11%), Query Frame = 1 Query: 31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 531 R E +L DL + Y + + +G ++T F G + D LRSL+R+ + I + DV T D G+ R+ V T SQ IR+ + E + +A+ ++ + + EI +A IYPL+ I K K+LK P+ +LGK +E Sbjct: 45 RRVETTLYDLTGDFSQVYVHLYFKIIGNEGDRLITRFVGHELSRDYLRSLIRRKSSKINSIFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM5 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11 Identity = 52/192 (27.08%), Postives = 85/192 (44.27%), Query Frame = 1 Query: 31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 606 R+ E+SL DL NE ++ + + V G N + F G + T + L+S VR+ + I A VDV+T D F +R+ + T A+ +IR M +I+ A V + +G +I ++PL ++V+I K+ + GK +E V+ PA E + EAP Sbjct: 52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRINMEQIIRHMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKAVE----------APVEEPAAEEVAEAP 219
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11 Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = 1 Query: 16 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507 E + R EV+LGD+ ++ K+ + DV T F D LRSL+R+ + I+A + V+TTD++ ++L + FT T A SQ + IRR M +++ A L++ I + I +IYPL+ V ++K+ + P+ Sbjct: 38 EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLRRVEVKKLTLEARPE 192 The following BLAST results are available for this feature:
BLAST of CX078057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078057 ID=CX078057; Name=CX078057; organism=Citrus sinensis; type=EST; length=797bpback to top |