CX078057

Overview
NameCX078057
Unique NameCX078057
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:236..1032. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM7 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.615e-11
Identity = 53/194 (27.32%), Postives = 85/194 (43.81%), Query Frame = 1
Query:   31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAPTE 612
            R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL     ++V+I K+   + GK++E               P +E   EAP E
Sbjct:   52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKVVEA--------------PVEEAAVEAPVE 217          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METVS (30S ribosomal protein S3Ae OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.755e-11
Identity = 46/162 (28.40%), Postives = 78/162 (48.15%), Query Frame = 1
Query:   22 LKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507
            L  R+ E+SL DL NE      ++  + + V G N +T F G + T + L+S +R+  + I   +DV+T D F +R+  +  T      V+   Y +T    +IR KM +I+   A        V   +   +G +I      ++PL+ V I K ++L+  K
Sbjct:   49 LMGRISEISLRDLTNEHSKHMTRMYFKVDGVSGNNAITQFVGHDTTREYLKSQIRRRRSKINVIIDVRTKDGFKVRVKALVLT-----AVRARDYHKT----EIRVKMEQIIKEMANETAFAEFVHAMVMGGVGSKIYSECKKMFPLKRVEIFKSEVLEFGK 201          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_NATPD (30S ribosomal protein S3Ae OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 44/164 (26.83%), Postives = 79/164 (48.17%), Query Frame = 1
Query:   16 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507
            E +  R  + +LG+L N+      K+  +  DV      T+F     T D LRSL R+  + ++A+V V TTD++ +++  + +T         T  A  SQ + IR  M +++   AA      L++  +   +   I     +IYPL+ V I+K ++  +P+
Sbjct:   38 EQVYDRTVQTTLGELQNDPSENNTKLTFQISDVGSDTAYTDFVQHELTRDYLRSLTRRGTSKVDAFVTVLTTDDYRVQVQPVAYT---------TKSADRSQEQAIRSTMVDLVEESAADNTFADLIDSIVEGRLSSAIYNEAKTIYPLRRVEIQKTRLQASPE 192          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM6 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 53/192 (27.60%), Postives = 85/192 (44.27%), Query Frame = 1
Query:   31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 606
            R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F LR+  +  T            A+     +IR KM +I+   A        V   +   +G +I      ++PL     ++V+I K+   + GK +E            V+  A E + EAP
Sbjct:   52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKLRVKALVLT---------AVRARDHHKTEIRVKMEQIIKDMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKAVE----------APVEEAAAEEVAEAP 219          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_SULSO (30S ribosomal protein S3Ae OS=Sulfolobus solfataricus GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 48/167 (28.74%), Postives = 77/167 (46.11%), Query Frame = 1
Query:   31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 531
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + I +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +A   IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIIGNEGDRLITRFVGHELSRDYLRSLIRRKSSKINSIFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETVSKKASELSFDDFTQEVVFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_METM5 (30S ribosomal protein S3Ae OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 52/192 (27.08%), Postives = 85/192 (44.27%), Query Frame = 1
Query:   31 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRPADEPMPEAP 606
            R+ E+SL DL NE      ++  + + V G N  + F G + T + L+S VR+  + I A VDV+T D F +R+  +  T            A+     +IR  M +I+   A        V   +   +G +I      ++PL     ++V+I K+   + GK +E            V+ PA E + EAP
Sbjct:   52 RISEISLRDLTNEHSKHMTRMYFKVDGVSGNNATSQFVGHDTTREYLKSQVRRRRSKINAIVDVRTKDGFKVRVKALVLT---------AVRARDHHKTEIRINMEQIIRHMAKETAFAEFVHAMLMGGLGSKIYGDCKKMFPL-----KRVEIFKSEVLEFGKAVE----------APVEEPAAEEVAEAP 219          
BLAST of CX078057 vs. ExPASy Swiss-Prot
Match: RS3A_HALWD (30S ribosomal protein S3Ae OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.700e-11
Identity = 46/164 (28.05%), Postives = 78/164 (47.56%), Query Frame = 1
Query:   16 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 507
            E +  R  EV+LGD+  ++     K+  +  DV      T F       D LRSL+R+  + I+A + V+TTD++ ++L  + FT         T  A  SQ + IRR M +++   A       L++  I   +   I     +IYPL+ V ++K+ +   P+
Sbjct:   38 EKIHGRTLEVTLGDITGDQGENNTKLTFKVNDVTSDAAYTEFIKHELARDYLRSLIRRGASKIDAAITVRTTDDYRVQLQPVAFT---------TKKADRSQEQAIRRVMIDLVEDAADERTFADLIDAAIEGQLSSAIYGEAKTIYPLRRVEVKKLTLEARPE 192          
The following BLAST results are available for this feature:
BLAST of CX078057 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_METM71.615e-1127.3230S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_METVS2.755e-1128.4030S ribosomal protein S3Ae OS=Methanococcus vannie... [more]
RS3A_NATPD3.598e-1126.8330S ribosomal protein S3Ae OS=Natronomonas pharaon... [more]
RS3A_METM63.598e-1127.6030S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_SULSO4.700e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus solfatari... [more]
RS3A_METM54.700e-1127.0830S ribosomal protein S3Ae OS=Methanococcus maripa... [more]
RS3A_HALWD4.700e-1128.0530S ribosomal protein S3Ae OS=Haloquadratum walsby... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F10-K20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078057 ID=CX078057; Name=CX078057; organism=Citrus sinensis; type=EST; length=797bp
ACCAAGATTGCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACT
AGGTGATCTTCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGA
GAGCTGAAGATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATG
AATTTCACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTT
GATTGAAGCTTACGTGGATGTCAAGACCACTGATAACTTCACATTGAGGT
TGTTCTGCATTGGATTCACCAAGAGACTTCCAAACCAGGTTAAGAGGACT
TGCTACGCACAGACCAGCCAGATTAGACAGATTCGCCGCAAGATGAGGGA
GATCATGGTTGCTCAGGCAGCATCTTGTGATCTTAAGAGCTTGGTCGAAA
AGTTCATTGCTGAAGTGATTGGAAGAGAGATTGAGAAGGCAACGTCAAGC
ATATACCCCTTACAAAATGTGTTCATTCGCAAAGTGAAGATCCTGAAAGC
TCCCAAGTTTGATCTTGGAAAATTGATGGAGGTTCACGGTGATTACTCGG
AAGATGTTGGTGTGAAGGTGGATAGGCCAGCTGATGAGCCCATGCCTGAA
GCACCAACTGAAGTGATTGGAGCTTGAACGTGAATGAAGAAATTTTTCTA
GTTTTGTTTTTCACTACTATTCTGATCTGGGCAGTTTTGTTTGTTATGAA
TTCATCATATATGAATGTTTCAAGTTGTTTGCAGATTTTAAATATTCTAG
CTGAGATGGTTACTGTTGTTTCTATGGTAAGAACATGTGCTTTCTTC
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