CX078056
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15 Identity = 47/158 (29.75%), Postives = 83/158 (52.53%), Query Frame = -1 Query: 306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779 R EVSL D+ + H K+R + V G +T F G+ T D +RSLVRK + + A V+VKT D + +R+ + T T ++Q +R++M +++ +A+ D+ +++ + ++ ++ A I PL+ V I K+K+LK P Sbjct: 55 RTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPLRKVEIAKIKVLKYP 203
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14 Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = -1 Query: 312 RVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILK 779 R F V+ GDL + ++ R + + V G N + F GM + +K+ ++RKWHTLIEA + + T D T R+F TK+ P+ +K YA+ S+I+ IR+++ E + +++ LV+ E + +E E + IYP+ + I KVK +K Sbjct: 67 RTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMII-KVKPIK 224
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14 Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -1 Query: 306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779 R E ++G+L N+ K+ LR +V G T+ G TTD +RS+V++ + I+A VDV+T D F +R VK TC+ A++SQ++ IR M +I+ +A+ D ++ +++ I + I + IYPL+ V IRK ++ P Sbjct: 46 RNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14 Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = -1 Query: 303 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779 RV E +L DL + K+ + DV+G+N T F G + +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IR MR+I+ +A + K + + + + EI K IYP++ IRK+K+L P+ Sbjct: 50 RVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYRR---------IQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPIKRAEIRKIKVLAEPE 199
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14 Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = -1 Query: 306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779 R EVSL D+ + H K+R + V G T F G+ T D +RSLVRK + + A VDVKT D + +R+ + T T+Q IR+++ E + +A+ D+ +++ + + E+ A I PL+ V + K+K+L+ P Sbjct: 55 RTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAH---------RIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPLRKVEVAKIKVLRYP 203
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13 Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = -1 Query: 303 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779 RV E +L DL + + K+ + DV+G+N T F G +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IRR +++I+ +A + V + + I EI K IYP++ IRK+K+L P+ Sbjct: 50 RVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEIRKIKVLAEPE 199
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13 Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = -1 Query: 303 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 794 E +K R+ E +L D+ + + K+ R DV+G+N T F G +RSLVR+ T I+ +V T D + LR+ + R Q+SQ R +R M +++ +A V + + +G E+ + IYPL+ IRK+K+L P+ Sbjct: 45 EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPLKRAEIRKIKVLAEPE 199
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13 Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = -1 Query: 306 ASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 800 A++ L +V E +L DL + Y + R V+G +LT F G + D +RSLVR+ + I+A DV T D + LR+ + T T A SQ +IR+ + I+ +A+ V+ + + +I + IYPL+ V + K K+LKAP Sbjct: 38 ANQALNRKV-ETTLYDLTGDYSLVYVHLYFRVIGVEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT---------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13 Identity = 47/158 (29.75%), Postives = 77/158 (48.73%), Query Frame = -1 Query: 306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779 RV E +L DL + + K+ + DV+G+N T F G +RSLVR+ T ++ ++ T D + LR+ + R QTSQ R IR+ +++I+ +A + V + + I EI K IYP++ +RK+K+L P Sbjct: 50 RVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVLAEP 198
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13 Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = -1 Query: 306 SEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 797 +E L R EVSL D+ + H K++ + V+G LT F G+ + D ++SLVRK + + A +VKT D +R+ + T T+Q +R+K+ E ++ +A+ D +++ + + ++ A I PL+ V K+K+LK P Sbjct: 49 AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKVLKYP 203 The following BLAST results are available for this feature:
BLAST of CX078056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 197
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078056 ID=CX078056; Name=CX078056; organism=Citrus sinensis; type=EST; length=812bpback to top |