CX078056

Overview
NameCX078056
Unique NameCX078056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRIL (30S ribosomal protein S3Ae OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.456e-15
Identity = 47/158 (29.75%), Postives = 83/158 (52.53%), Query Frame = -1
Query:  306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779
            R  EVSL D+  +  H   K+R +   V G   +T F G+  T D +RSLVRK  + + A V+VKT D + +R+  +  T         T    ++Q   +R++M +++  +A+  D+   +++ +  ++  ++  A   I PL+ V I K+K+LK P
Sbjct:   55 RTLEVSLFDITKDLSHLPIKLRFQIHKVDGLKAITRFKGLELTRDYIRSLVRKGTSKVSAIVEVKTKDGWVMRIAVLAIT---------THRIGSAQKSAMRKRMFDVLTRKASEMDIGQFLKEVLEGLLTADLFVAGKKIAPLRKVEIAKIKVLKYP 203          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_ENTBH (40S ribosomal protein S1 OS=Enterocytozoon bieneusi (strain H348) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.106e-14
Identity = 52/161 (32.30%), Postives = 87/161 (54.04%), Query Frame = -1
Query:  312 RVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRL-PNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILK 779
            R F V+ GDL   +     ++ R  + +   V G N  + F GM  + +K+  ++RKWHTLIEA + + T D  T R+F    TK+  P+ +K   YA+ S+I+ IR+++ E  +      +++ LV+    E + +E E   + IYP+  + I KVK +K
Sbjct:   67 RTFSVNQGDLECADPMNAVNSPRYFKFKVNAVCGNNCNSVFNGMEVSREKITGMIRKWHTLIEANIPITTKDGSTWRVFVNAVTKKKNPDSLKH--YAKASEIKIIRKRIVETTLEHLDGIEVEKLVKVLSTEGLAKEFETRCNEIYPIFAMII-KVKPIK 224          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_METMA (30S ribosomal protein S3Ae OS=Methanosarcina mazei GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.751e-14
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = -1
Query:  306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCY----AQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779
            R  E ++G+L N+      K+ LR  +V G    T+  G   TTD +RS+V++  + I+A VDV+T D F +R             VK TC+    A++SQ++ IR  M +I+  +A+  D ++ +++ I   +   I +    IYPL+ V IRK ++   P
Sbjct:   46 RNVETTVGELTNDMTKNNTKVILRVNNVVGDIATTDLMGHELTTDYVRSIVKRQTSRIDANVDVRTKDGFVIR-------------VKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFIYPLRRVEIRKTQVEAMP 194          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THEON (30S ribosomal protein S3Ae OS=Thermococcus onnurineus (strain NA1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.593e-14
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = -1
Query:  303 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779
            RV E +L DL  +      K+  +  DV+G+N  T F G   +   +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR  MR+I+  +A   + K  + + +   +  EI K    IYP++   IRK+K+L  P+
Sbjct:   50 RVIETTLKDLTGDFTKGQVKLYFQIYDVKGQNAYTKFKGHTLSRSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYRR---------IQTSQERAIREIMRDIIYKKAEELNYKDFILEAVTGKMATEIAKEARKIYPIKRAEIRKIKVLAEPE 199          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THENV (30S ribosomal protein S3Ae OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.693e-14
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = -1
Query:  306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779
            R  EVSL D+  +  H   K+R +   V G    T F G+  T D +RSLVRK  + + A VDVKT D + +R+  +  T              T+Q   IR+++ E +  +A+  D+   +++ +   +  E+  A   I PL+ V + K+K+L+ P
Sbjct:   55 RTIEVSLYDITKDISHLPIKLRFQIHRVDGLKAATRFKGLELTRDYVRSLVRKGTSKVSAIVDVKTKDGWVMRISILAVTAH---------RIGTAQKSAIRKRVAEALSRKASDSDVGQFLKEVLEGSLAAELFVAGKKIAPLRKVEVAKIKVLRYP 203          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THEGJ (30S ribosomal protein S3Ae OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.045e-13
Identity = 49/159 (30.82%), Postives = 78/159 (49.06%), Query Frame = -1
Query:  303 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779
            RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IRR +++I+  +A   +    V + +   I  EI K    IYP++   IRK+K+L  P+
Sbjct:   50 RVVETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRRIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEIRKIKVLAEPE 199          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_THESM (30S ribosomal protein S3Ae OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.365e-13
Identity = 48/164 (29.27%), Postives = 79/164 (48.17%), Query Frame = -1
Query:  303 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 794
            E +K R+ E +L D+  +    + K+  R  DV+G+N  T F G       +RSLVR+  T I+   +V T D + LR+  +    R           Q+SQ R +R  M +++  +A        V + +   +G E+ +    IYPL+   IRK+K+L  P+
Sbjct:   45 EKVKGRIIETTLRDVTGDFTKGHVKLYFRIHDVKGQNAYTKFKGHKLARSYIRSLVRRRTTRIDGIFNVTTKDGYKLRVMGMVIAIR---------RIQSSQERAVREVMEDLIRKKAEELTFTEFVLEAVNGKMGAELAREAKKIYPLKRAEIRKIKVLAEPE 199          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULTO (30S ribosomal protein S3Ae OS=Sulfolobus tokodaii GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.783e-13
Identity = 51/165 (30.91%), Postives = 81/165 (49.09%), Query Frame = -1
Query:  306 ASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 800
            A++ L  +V E +L DL  +    Y  +  R   V+G  +LT F G   + D +RSLVR+  + I+A  DV T D + LR+  +  T         T  A  SQ  +IR+ +  I+  +A+       V+  +   +  +I +    IYPL+ V + K K+LKAP
Sbjct:   38 ANQALNRKV-ETTLYDLTGDYSLVYVHLYFRVIGVEGDRLLTRFAGHELSRDYIRSLVRRKSSKIDAITDVTTKDGYVLRVKGLALT---------TYRAHRSQKTEIRKIIWNILSTRASETTFDEFVQDIVFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRKO (30S ribosomal protein S3Ae OS=Pyrococcus kodakaraensis GN=rps3ae PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.042e-13
Identity = 47/158 (29.75%), Postives = 77/158 (48.73%), Query Frame = -1
Query:  306 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 779
            RV E +L DL  +    + K+  +  DV+G+N  T F G       +RSLVR+  T ++   ++ T D + LR+  +    R           QTSQ R IR+ +++I+  +A   +    V + +   I  EI K    IYP++   +RK+K+L  P
Sbjct:   50 RVIETTLKDLTGDFTKGHVKLYFQVYDVKGQNAYTKFKGHTLARSYIRSLVRRRTTRVDGIFNITTKDGYKLRVMGMVIAYR---------RIQTSQERAIRKIIQDIIYKKAEELNFADFVLQSVNGQIASEIAKEARKIYPIKRAEVRKIKVLAEP 198          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_PYRAR (30S ribosomal protein S3Ae OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.776e-13
Identity = 46/164 (28.05%), Postives = 81/164 (49.39%), Query Frame = -1
Query:  306 SEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 797
            +E L  R  EVSL D+  +  H   K++ +   V+G   LT F G+  + D ++SLVRK  + + A  +VKT D   +R+  +  T              T+Q   +R+K+ E ++ +A+  D    +++ +   +  ++  A   I PL+ V   K+K+LK P
Sbjct:   49 AEKLLMRTLEVSLYDITKDISHLPVKLKFQIHRVEGLRALTRFKGLELSRDYVKSLVRKGTSKVVAITEVKTKDGMDMRVSVMVITAH---------RLGTAQKSAVRKKITETLLKKASEMDTSQFLKEVLEGTLAADLFIAAKKIAPLRKVEFAKIKVLKYP 203          
The following BLAST results are available for this feature:
BLAST of CX078056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_PYRIL9.456e-1529.7530S ribosomal protein S3Ae OS=Pyrobaculum islandic... [more]
RS3A_ENTBH2.106e-1432.3040S ribosomal protein S1 OS=Enterocytozoon bieneus... [more]
RS3A_METMA2.751e-1431.4830S ribosomal protein S3Ae OS=Methanosarcina mazei... [more]
RS3A_THEON3.593e-1430.8230S ribosomal protein S3Ae OS=Thermococcus onnurin... [more]
RS3A_THENV4.693e-1430.3830S ribosomal protein S3Ae OS=Thermoproteus neutro... [more]
RS3A_THEGJ1.045e-1330.8230S ribosomal protein S3Ae OS=Thermococcus gammato... [more]
RS3A_THESM1.365e-1329.2730S ribosomal protein S3Ae OS=Thermococcus sibiric... [more]
RS3A_SULTO1.783e-1330.9130S ribosomal protein S3Ae OS=Sulfolobus tokodaii ... [more]
RS3A_PYRKO3.042e-1329.7530S ribosomal protein S3Ae OS=Pyrococcus kodakarae... [more]
RS3A_PYRAR6.776e-1328.0530S ribosomal protein S3Ae OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F10-K20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078056 ID=CX078056; Name=CX078056; organism=Citrus sinensis; type=EST; length=812bp
CTTTTTTTTTAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAA
CCATCTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATA
TATGATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAA
AAACAAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACAC
CAACATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCA
AACTTGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAA
GGGGTATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAG
CAATGAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCA
ACCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTG
TGCGTAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACAACCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAA
GCTTCAATCAAGGTATGCCACTTCCTAACCAAAGACCTCAGCTTGTCTGT
AGTGAAATTCATGCCCCAGAAGTTAGTCAAAACATTCTTCCCTTGGACAT
CTTCAGCTCTCAGTCTGATCTTCCTGTAAGCATGCTCTTCTTCATTGAGA
AGATCACCTAGTGATACCTCAAACACTCTGTGCTTGAGACCTTCTGATGC
AATCTTGGTCCT
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