CX078056

Overview
NameCX078056
Unique NameCX078056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_METB6 (30S ribosomal protein S3Ae OS=Methanoregula boonei (strain 6A8) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.575e-12
Identity = 48/161 (29.81%), Postives = 81/161 (50.31%), Query Frame = -1
Query:  318 EGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLF--CIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKI 794
            E +K R+ + +LG++ N+    + K+  +  +V G    T F G   T D LRSLV++  + I+ +V V T DN  +RL   C  F +           A  +Q   +R  +   +VAQA + DL +LV   ++  I +++ K   ++YP + V I K K+
Sbjct:   42 ETVKGRIMQATLGEITNDYAKQHIKMSFKIAEVTGDAAYTEFVGHEVTRDYLRSLVKRRSSRIDCHVQVVTKDNKKVRLTISCYTFAR-----------ANIAQEHALRNAITAGLVAQAQAWDLNTLVNGVVSGEISKDLFKLVKTLYPTRRVEIIKSKV 191          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULAC (30S ribosomal protein S3Ae OS=Sulfolobus acidocaldarius GN=rps3ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.363e-12
Identity = 55/163 (33.74%), Postives = 78/163 (47.85%), Query Frame = -1
Query:  303 RVFEVSLGDLLNEEE----HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779
            R  EV+L DL  +      H Y KI     ++ G  + T F+G   + D +RSLVR+  + I A VDV T D + LR+  +  T         T  A  SQ   IR+ + +I   +A   D    V+  I   +  +I +    IYPL+ V I K K+LKAPK
Sbjct:   46 RKIEVTLYDLTGDYNLVYIHLYFKI---LGNISGDKLSTIFYGHELSRDYIRSLVRRKSSKINAVVDVTTKDGYMLRVKGLVLT---------TYRAHISQKTAIRKVISDITRKKAEESDFDQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_METTH (30S ribosomal protein S3Ae OS=Methanobacterium thermoautotrophicum GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.392e-12
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = -1
Query:  306 LKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAP 788
            LK RV E ++ +L  +    Y K++ + + V G    T F G   TTD +RS++R+  + ++A V V+T D + L++  +  T R          A++SQ + +R+ + E +   A+    + LVE  +   I  EI      IYPL+ V I K ++L+ P
Sbjct:   44 LKRRV-EATMRELTGDFSKQYVKLKFQIDSVAGSEATTRFIGHQVTTDYVRSMIRRGTSRVDAPVIVETKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGIVTGKIASEIYHQAKKIYPLKRVEIIKSRVLEEP 194          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIY (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIN (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIM (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIL (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIK (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_SULIA (30S ribosomal protein S3Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 48/167 (28.74%), Postives = 78/167 (46.71%), Query Frame = -1
Query:  279 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLME 779
            R  E +L DL  +    Y  +  +    +G  ++T F G   + D LRSL+R+  + + +  DV T D         G+  R+   V  T     SQ   IR+ + E +  +A+        ++ +   +  EI +AT  IYPL+   I K K+LK P+ +LGK +E
Sbjct:   45 RRVETTLYDLTGDFSQVYVHLYFKIVSNEGDRLITRFVGHELSRDYLRSLIRRKSSKVNSVFDVTTKD---------GYVVRVKGLVLTTYKCHQSQKTAIRKIINETISKKASELTFDDFTQEVVFGRLANEIFEATKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_HALMA (30S ribosomal protein S3Ae OS=Haloarcula marismortui GN=rps3Ae PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.278e-11
Identity = 45/159 (28.30%), Postives = 75/159 (47.17%), Query Frame = -1
Query:  303 RVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPK 779
            R  E +LG+L N+      K+  +  +V   +  T F     T D LRSLVR+  + +EAY+ V TTD++ +++  +  T         T  A  SQ + IRR M +++   A     + L++  +   +   I      IYPL+ V I+K  +   P+
Sbjct:   43 RTIETTLGELTNDASENNTKLTFKINEVASDSAYTEFIRHELTRDYLRSLVRRGSSKVEAYITVLTTDDYRVQIQPVAVT---------TKKADASQEKAIRRTMIDLVRETAEDHTFEQLIDSVVEGRLSSAIYGEAKDIYPLRRVEIKKTTLEARPE 192          
The following BLAST results are available for this feature:
BLAST of CX078056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A_METB62.575e-1229.8130S ribosomal protein S3Ae OS=Methanoregula boonei... [more]
RS3A_SULAC3.363e-1233.7430S ribosomal protein S3Ae OS=Sulfolobus acidocald... [more]
RS3A_METTH4.392e-1229.8130S ribosomal protein S3Ae OS=Methanobacterium the... [more]
RS3A_SULIY1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIN1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIM1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIL1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIK1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_SULIA1.278e-1128.7430S ribosomal protein S3Ae OS=Sulfolobus islandicu... [more]
RS3A_HALMA1.278e-1128.3030S ribosomal protein S3Ae OS=Haloarcula marismort... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F10-K20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078056 ID=CX078056; Name=CX078056; organism=Citrus sinensis; type=EST; length=812bp
CTTTTTTTTTAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAA
CCATCTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATA
TATGATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAA
AAACAAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACAC
CAACATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCA
AACTTGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAA
GGGGTATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAG
CAATGAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCA
ACCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTG
TGCGTAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACAACCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAA
GCTTCAATCAAGGTATGCCACTTCCTAACCAAAGACCTCAGCTTGTCTGT
AGTGAAATTCATGCCCCAGAAGTTAGTCAAAACATTCTTCCCTTGGACAT
CTTCAGCTCTCAGTCTGATCTTCCTGTAAGCATGCTCTTCTTCATTGAGA
AGATCACCTAGTGATACCTCAAACACTCTGTGCTTGAGACCTTCTGATGC
AATCTTGGTCCT
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