CX078056

Overview
NameCX078056
Unique NameCX078056
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:233..1044. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A2_PICST (40S ribosomal protein S1-B OS=Pichia stipitis GN=RPS1B PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.389e-60
Identity = 115/191 (60.21%), Postives = 152/191 (79.58%), Query Frame = -1
Query:  237 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVD 806
            K A++GLK RV EVSL DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+D++ LR+F I FTKR  NQ+K+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T +I+PLQNV IRKVK+LK PKFDLG L+ +HG+ S E+ G KV+
Sbjct:   55 KNAADGLKGRVVEVSLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTSDDYVLRVFAIAFTKRQANQIKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDLGALLALHGEGSTEEKGKKVN 245          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_COCP7 (40S ribosomal protein S1 OS=Coccidioides posadasii (strain C735) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.650e-60
Identity = 123/201 (61.19%), Postives = 155/201 (77.11%), Query Frame = -1
Query:  207 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 806
            K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:   55 KNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_COCIM (40S ribosomal protein S1 OS=Coccidioides immitis GN=RPS1 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.650e-60
Identity = 123/201 (61.19%), Postives = 155/201 (77.11%), Query Frame = -1
Query:  207 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 806
            K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A+S  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFDLG L+ +HG+ S +D G KV+R   E + E+
Sbjct:   55 KNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASSRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDLGGLLALHGEASTDDKGQKVEREFTEQVLES 254          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A2_CLAL4 (40S ribosomal protein S1-B OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1B PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.650e-60
Identity = 115/190 (60.53%), Postives = 149/190 (78.42%), Query Frame = -1
Query:  240 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 806
            K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:   55 KNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A1_CLAL4 (40S ribosomal protein S1-A OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS1A PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 9.650e-60
Identity = 115/190 (60.53%), Postives = 149/190 (78.42%), Query Frame = -1
Query:  240 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKV 806
            K A++GLK RVFEV L DL   E+H+YRK++LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT D++ LR+F I FTKR  NQVK+T YAQ+S++R++R+KM EIM  + ++  L  L  K I EVIGREIEK+T SI PLQN+ IRKVK+LK PKFDLG L+ +HG+ S E+ G KV
Sbjct:   55 KNAADGLKGRVFEVCLADLQGSEDHSYRKVKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTADDYVLRVFAIAFTKRQANQVKKTTYAQSSKLREVRKKMIEIMQREVSNVTLAQLTSKLIPEVIGREIEKSTQSILPLQNIHIRKVKLLKQPKFDLGSLLALHGEGSTEEKGKKV 244          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_BABBO (40S ribosomal protein S3a OS=Babesia bovis GN=BBOV_III001480 PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.150e-59
Identity = 109/187 (58.29%), Postives = 148/187 (79.14%), Query Frame = -1
Query:  249 TKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVG 809
            TK+A++GL+ R++EVSL DL  +E+ +YRKI+L  ED+QG+N LTNF G + T DKL SL+RK ++LIEA+ DVKTTD +TLR+FCIG+TKR P Q+K TCY ++S+ R +RRKM E+M  +A++  ++ +V+K I E IG+EIEKA  S++PLQNV IRK+K+LK PKFDL KLMEVH D SE+ G
Sbjct:   54 TKLATDGLRGRIYEVSLADLNADEDQSYRKIKLCCEDIQGRNCLTNFHGTSVTRDKLCSLIRKNYSLIEAFTDVKTTDGYTLRMFCIGYTKRRPGQLKSTCYIRSSRTRVVRRKMIEVMQREASTTSMREVVKKIIPESIGKEIEKACKSVFPLQNVLIRKIKVLKKPKFDLTKLMEVHTDISEETG 240          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_UNCRE (40S ribosomal protein S1 OS=Uncinocarpus reesii (strain UAMH 1704) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 2.808e-59
Identity = 121/201 (60.20%), Postives = 155/201 (77.11%), Query Frame = -1
Query:  207 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYS-EDVGVKVDRPADEPMPEA 806
            K A++ LK R+FEVSL DL N++ H++RKI+LR ++VQGKN LTNF GM+FT+DKLRSLVRKW +LIEA V VKTTD++ +RLF I FTKR   QVK+T YA++SQIR IR+KM EI+  +A++  L  L  K + EVIGREIEKAT  IYPLQNV IRKVK+LK PKFD+G L+ +HG+ S +D G KV+R   E + E+
Sbjct:   55 KNANDSLKGRIFEVSLADLQNDQAHSFRKIKLRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQSLIEANVTVKTTDDYLVRLFAIAFTKRRSFQVKKTTYARSSQIRAIRKKMVEIIQREASTRTLTQLT-KLVPEVIGREIEKATRGIYPLQNVHIRKVKLLKQPKFDIGALLALHGESSTDDKGQKVEREFKEQVLES 254          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_CRYHO (40S ribosomal protein S3a OS=Cryptosporidium hominis GN=Chro.40360 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.808e-59
Identity = 115/192 (59.90%), Postives = 148/192 (77.08%), Query Frame = -1
Query:  240 TKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVH--GDYSEDVGVKV 809
            TK+A + L+HRV+EVSL DL N+E+ A+RKI+L+ ED+QG+  LT F GM+ T DKL SL+RK+ TLIEA+ +VKT+D + LRLFCI FT+R+ +QVK TCYAQTSQIRQIR+KM EI+ A+A    L+ LV+KFI E IG+EIEKA   I+PLQ+VFIRKVK+L  P FD+ +LME H   D  E+ G KV
Sbjct:   54 TKLAVDALRHRVYEVSLADLNNDEDQAFRKIKLQCEDIQGRTCLTEFHGMDMTRDKLCSLIRKYQTLIEAHCNVKTSDGYVLRLFCIAFTRRMADQVKSTCYAQTSQIRQIRKKMVEIITAEAEGTTLRDLVKKFIPESIGKEIEKACRHIFPLQHVFIRKVKVLSKPSFDVSRLMESHVGADGVEEKGTKV 245          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A_TRIIF (40S ribosomal protein S3a OS=Triatoma infestans PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.667e-59
Identity = 120/202 (59.41%), Postives = 153/202 (75.74%), Query Frame = -1
Query:  219 TKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGD--YSEDVGVKVDRP-ADEP 809
            TKIASEGLK RVFEVSL DL N+   E +YRK RL AEDVQ +NVLTNF GM+ TTDKLRS+V+KW TLIEA VDV+TTD + LR+FCIGFT +     ++TCYAQ +Q+RQIRRKM + + +  ++ DL+ +V K I + I ++IEKA   IYPL +V+IRKVK+LK P+F+L KL+E+HGD   S++ G KV RP A EP
Sbjct:   55 TKIASEGLKGRVFEVSLADLQNDTDAERSYRKFRLIAEDVQARNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVRTTDGYLLRVFCIGFTNKDQLSQRKTCYAQHTQVRQIRRKMVDNITSSISNSDLRVVVNKLIPDSIAKDIEKACQGIYPLHDVYIRKVKVLKKPRFELSKLLELHGDGKGSDEPGAKVSRPEAYEP 256          
BLAST of CX078056 vs. ExPASy Swiss-Prot
Match: RS3A1_SCHPO (40S ribosomal protein S1-A OS=Schizosaccharomyces pombe GN=rps101 PE=2 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.667e-59
Identity = 115/189 (60.85%), Postives = 147/189 (77.78%), Query Frame = -1
Query:  240 KIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKV 806
            K A++ LK R+ EVSL DL  +EEH++RK++LR ED+QGK+ LT+F G + T+DKLRSLVRKW + IEA   +KTTD +  R+F IGFT R  NQVK+T YAQ+SQIR I +KM +++  QA  C +K LV+K I EVIGR IEKAT++IYPLQNVF+RKVKILKAPK D  KL+E+HG+ S+DVG KV
Sbjct:   55 KNANDSLKGRILEVSLADLQKDEEHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 242          
The following BLAST results are available for this feature:
BLAST of CX078056 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
RS3A2_PICST7.389e-6060.2140S ribosomal protein S1-B OS=Pichia stipitis GN=R... [more]
RS3A_COCP79.650e-6061.1940S ribosomal protein S1 OS=Coccidioides posadasii... [more]
RS3A_COCIM9.650e-6061.1940S ribosomal protein S1 OS=Coccidioides immitis G... [more]
RS3A2_CLAL49.650e-6060.5340S ribosomal protein S1-B OS=Clavispora lusitania... [more]
RS3A1_CLAL49.650e-6060.5340S ribosomal protein S1-A OS=Clavispora lusitania... [more]
RS3A_BABBO2.150e-5958.2940S ribosomal protein S3a OS=Babesia bovis GN=BBOV... [more]
RS3A_UNCRE2.808e-5960.2040S ribosomal protein S1 OS=Uncinocarpus reesii (s... [more]
RS3A_CRYHO2.808e-5959.9040S ribosomal protein S3a OS=Cryptosporidium homin... [more]
RS3A_TRIIF3.667e-5959.4140S ribosomal protein S3a OS=Triatoma infestans PE... [more]
RS3A1_SCHPO3.667e-5960.8540S ribosomal protein S1-A OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F10-K20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078056 ID=CX078056; Name=CX078056; organism=Citrus sinensis; type=EST; length=812bp
CTTTTTTTTTAAGAAGAAAGCACATGTTCTTACCATAGAAACAACAGTAA
CCATCTCAGCTAGAATATTTAAAATCTGCAAACAACTTGAAACATTCATA
TATGATGAATTCATAACAAACAAAACTGCCCAGATCAGAATAGTAGTGAA
AAACAAAACTAGAAAAATTTCTTCATTCACGTTCAAGCTCCAATCACTTC
AGTTGGTGCTTCAGGCATGGGCTCATCAGCTGGCCTATCCACCTTCACAC
CAACATCTTCCGAGTAATCACCGTGAACCTCCATCAATTTTCCAAGATCA
AACTTGGGAGCTTTCAGGATCTTCACTTTGCGAATGAACACATTTTGTAA
GGGGTATATGCTTGACGTTGCCTTCTCAATCTCTCTTCCAATCACTTCAG
CAATGAACTTTTCGACCAAGCTCTTAAGATCACAAGATGCTGCCTGAGCA
ACCATGATCTCCCTCATCTTGCGGCGAATCTGTCTAATCTGGCTGGTCTG
TGCGTAGCAAGTCCTCTTAACCTGGTTTGGAAGTCTCTTGGTGAATCCAA
TGCAGAACAACCTCAATGTGAAGTTATCAGTGGTCTTGACATCCACGTAA
GCTTCAATCAAGGTATGCCACTTCCTAACCAAAGACCTCAGCTTGTCTGT
AGTGAAATTCATGCCCCAGAAGTTAGTCAAAACATTCTTCCCTTGGACAT
CTTCAGCTCTCAGTCTGATCTTCCTGTAAGCATGCTCTTCTTCATTGAGA
AGATCACCTAGTGATACCTCAAACACTCTGTGCTTGAGACCTTCTGATGC
AATCTTGGTCCT
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