CX078050

Overview
NameCX078050
Unique NameCX078050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX078050_ssr384 microsatellite CX078050_ssr384:384..398. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig8503 contig Csv1_Contig8503:75..491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX078050 vs. ExPASy Swiss-Prot
Match: RS29_SCHPO (40S ribosomal protein S29 OS=Schizosaccharomyces pombe GN=rps29 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 2.312e-12
Identity = 33/56 (58.93%), Postives = 36/56 (64.29%), Query Frame = -1 
Query:  208 MGHSNVWNSHPKTYGPGSRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 375
            M H NVW SHP+ YG GSR C   G    +IRKYGL   RQ FR  A +IGFVKYR
Sbjct:    1 MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVKYR 56
The following BLAST results are available for this feature:
BLAST of CX078050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_SCHPO2.312e-1258.9340S ribosomal protein S29 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F07-K14-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078050 ID=CX078050; Name=CX078050; organism=Citrus sinensis; type=EST; length=417bp
CTTTTTTAAGAGAACATTAAAGTAATAAGATTGGCAGTCATATTAAGACT
GCAAAGAAATCCATCTACAAAGTTCAAGCTCTAATTGATTCGCAAGCTTT
ATGCTACTTGCGAAAAACTAAAAAGAAATCACATGAAAACTGAAAATTTC
TCCATTCCTAGGTATGCTCCACAGTCCACTGCAAAGCCTTGACAGCCATC
TTCTTCAGCGGTACTTGACGAAACCGATCTCCTTGGCGTTGCTGCGGAAG
CACTGCCTGCAGCACATGAGGCCGTACTTTCTGATAATCGCATGAGGGTT
CCCGCAAACGCGGCAAGCACGAGATCCAGGGCCGTAGGTCTTGGGATGCG
AATTCCATACGTTTGAGTGACCCATCTCTTCTCTCCTGTCCTGTCCTGCT
CTGCTCTGCTGCCGCCT
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