CX078041

Overview
NameCX078041
Unique NameCX078041
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_BOVIN (Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE=2 SV=3)

HSP 1 Score: 278.485 bits (711), Expect = 2.970e-74
Identity = 139/246 (56.50%), Postives = 171/246 (69.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG    + ++++ LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A + RIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    6 KFFVGGNWKMNGRKNNLGELINTLNAAKVPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVANGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSARIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 5.066e-74
Identity = 139/246 (56.50%), Postives = 170/246 (69.11%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG  + + ++++ LN G+                +L   +  L   F V+AQNC+    GAFTGEIS  M+ +    WVILGHSERR +  E +E +G KVA+ALS+ + VI C+GE L+QREAG T +VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+WL  N S ++A + RIIYGGSV G  CKEL AQPD+DGFLVGGASLKPEFIDII + +
Sbjct:    5 KFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTI--YLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWLKTNVSEDVAKSVRIIYGGSVTGGTCKELGAQPDIDGFLVGGASLKPEFIDIINAKQ 248          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_GORGO (Triosephosphate isomerase OS=Gorilla gorilla gorilla GN=TPI1 PE=3 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 6.617e-74
Identity = 138/246 (56.10%), Postives = 170/246 (69.11%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK I D V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    6 KFFVGGNWKMNGRKQSLGELIGTLNAAKVPADTKVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVITDNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_RAT (Triosephosphate isomerase OS=Rattus norvegicus GN=Tpi1 PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 1.474e-73
Identity = 141/246 (57.32%), Postives = 169/246 (68.70%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG  + + +++  LN  +                ++   +  L P   VAAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR I  E +E +G KV +ALS+GL VIAC+GE L++REAG T +VV  QTKAIAD V  W  +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  N S  +A  TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    6 KFFVGGNWKMNGRKKCLGELICTLNAAKLPADTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHIFGESDELIGQKVNHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_CANFA (Triosephosphate isomerase OS=Canis familiaris GN=TPI1 PE=1 SV=3)

HSP 1 Score: 275.789 bits (704), Expect = 1.925e-73
Identity = 138/246 (56.10%), Postives = 171/246 (69.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG  + + ++++ LN  +                ++   +  L     VAAQNC+    GAFTGEIS  M+ +    WV+LGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N S  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    6 KFFVGGNWKMNGRKKNLGELITTLNAAKVPADTEVVCAPPTA--YIDFARQKLDAKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPISB_DANRE (Triosephosphate isomerase B OS=Danio rerio GN=tpi1b PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.925e-73
Identity = 139/244 (56.97%), Postives = 169/244 (69.26%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 734
            KFFVGGNWK NG  + ++++ + LN  +                +L   +S L P   VAAQNC+    GAFTGEIS  M+ +  + WVILGHSERR +  E +E +G KVA+AL  GL VIAC+GE L++REAG T +VV AQTK IAD V  WS +VLAYEPVWAIGTGK A+P QAQEVH +LR+WL  N S  +A + RIIYGGSV G  CKELA+Q D+DGFLVGGASLKPEFIDII +
Sbjct:    5 KFFVGGNWKMNGDKKSIEELANTLNSAKLNPDTEVVCGAPTI--YLDYARSKLDPNIDVAAQNCYKVAKGAFTGEISPAMIKDCGVKWVILGHSERRHVFGESDELIGQKVAHALENGLGVIACIGEKLDEREAGITEKVVFAQTKFIADNVKDWSKVVLAYEPVWAIGTGKTASPQQAQEVHDKLRQWLKTNVSEAVANSVRIIYGGSVTGGTCKELASQKDLDGFLVGGASLKPEFIDIINA 246          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 275.404 bits (703), Expect = 2.514e-73
Identity = 138/246 (56.10%), Postives = 171/246 (69.51%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 740
            KFFVGGNWK NG  + + +++  LN                   ++   +  L P   VAAQNC+    GAFTGEIS  M+ +L   WV+LGHSERR +  E +E +G KV++AL++GL VIAC+GE L++REAG T +VV  QTK IAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL +N +  +A +TRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII + +
Sbjct:    6 KFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTA--YIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAKQ 249          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_CHICK (Triosephosphate isomerase OS=Gallus gallus GN=TPI1 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 1.248e-72
Identity = 139/244 (56.97%), Postives = 170/244 (69.67%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 734
            KFFVGGNWK NG  + + +++  LN  +                +L   +  L     VAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR +  E +E +G KVA+AL++GL VIAC+GE L++REAG T +VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR WL ++ S  +A +TRIIYGGSV G NCKELA+Q DVDGFLVGGASLKPEF+DII +
Sbjct:    5 KFFVGGNWKMNGDKKSLGELIHTLNGAKLSADTEVVCGAPSI--YLDFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINA 246          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.630e-72
Identity = 136/244 (55.74%), Postives = 169/244 (69.26%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 734
            KFFVGGNWK NG  + + ++++ LN G+                +L   +  L     ++AQNC+    GAFTGEIS  M+ +    WVILGHSERR +  E +E +G KVA+ALS+G+ VIAC+GE L+QREAG T +VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W+  N S  +A + RIIYGGSV G  C+ELA QPD+DGFLVGGASLKPEFI+II +
Sbjct:    5 KFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAI--YLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPEFIEIINA 246          
BLAST of CX078041 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 2.780e-72
Identity = 140/244 (57.38%), Postives = 165/244 (67.62%), Query Frame = 3
Query:    3 KFFVGGNWKCNGTTEEVKKIVSVLNEGQXXXXXXXXXXXXXXXXFLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 734
            KFFVGGNWK NG  E + +++  LN                   +L   +S L     VAAQNC+    GAFTGEIS  M+ +  I WVILGHSERR +  E +E +G KVA+ L   L VIAC+GE LE+REAG+T +VV  QTK IAD V  W+ +VLAYEPVWAIGTGK A+P QAQEVH +LR WL AN S  +A + RIIYGGSV G NCKELAAQ DVDGFLVGGASLKPEF+DII +
Sbjct:    5 KFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSI--YLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEKLEEREAGTTEDVVFEQTKVIADNVKDWTRVVLAYEPVWAIGTGKTASPEQAQEVHEKLRGWLRANVSDAVADSVRIIYGGSVTGGNCKELAAQADVDGFLVGGASLKPEFVDIINA 246          
The following BLAST results are available for this feature:
BLAST of CX078041 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_BOVIN2.970e-7456.50Triosephosphate isomerase OS=Bos taurus GN=TPI1 PE... [more]
TPIS_XENTR5.066e-7456.50Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_GORGO6.617e-7456.10Triosephosphate isomerase OS=Gorilla gorilla goril... [more]
TPIS_RAT1.474e-7357.32Triosephosphate isomerase OS=Rattus norvegicus GN=... [more]
TPIS_CANFA1.925e-7356.10Triosephosphate isomerase OS=Canis familiaris GN=T... [more]
TPISB_DANRE1.925e-7356.97Triosephosphate isomerase B OS=Danio rerio GN=tpi1... [more]
TPIS_MOUSE2.514e-7356.10Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_CHICK1.248e-7256.97Triosephosphate isomerase OS=Gallus gallus GN=TPI1... [more]
TPIS_XENLA1.630e-7255.74Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPISA_DANRE2.780e-7257.38Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F01-K2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078041 ID=CX078041; Name=CX078041; organism=Citrus sinensis; type=EST; length=794bp
GGAAGTTCTTCGTCGGCGGTAACTGGAAATGCAATGGAACAACTGAAGAA
GTGAAAAAGATAGTGAGCGTACTCAATGAAGGTCAAGTTCCATCTTCTGA
TGTCGTTGAGGTCGTTGTTAGCCCTCCGTTTGTGTTTCTTGGACTGGTGA
AGAGTTCGTTGAGGCCTGGCTTTCATGTTGCGGCACAGAATTGCTGGGTC
AAGAAGGGAGGTGCTTTCACCGGTGAGATTAGTGCGGAAATGCTCGTCAA
TTTGGAAATTCCTTGGGTCATTCTTGGTCATTCTGAAAGGAGACTCATTT
TGAATGAATTAAATGAGTTTGTTGGGGATAAGGTTGCATATGCACTTTCT
CAAGGTTTGAAGGTGATTGCTTGTGTTGGTGAGACACTTGAGCAGCGTGA
AGCAGGATCTACTATGGAAGTTGTTGCTGCACAAACTAAAGCAATCGCAG
ATCGAGTCTCAAGCTGGTCAAACATTGTTTTGGCCTATGAACCTGTGTGG
GCTATTGGAACTGGGAAGGTTGCCACTCCAGCGCAGGCTCAAGAAGTACA
TTTTGAACTGAGGAAATGGCTTCTTGCAAACACCAGTCCTGAAATTGCTG
CAGCAACACGGATCATCTACGGAGGATCCGTAAATGGTGCAAACTGCAAG
GAATTGGCTGCACAGCCTGATGTTGACGGATTTTTGGTTGGTGGTGCTTC
GTTGAAGCCGGAGTTCATTGACATCATCAAATCTGCTGAGCTGAAGTAAA
ATTCTTGAGCTTTATTTCAAGCGCAGTTTGCTGATGAAGTATTT
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