CX078040

Overview
NameCX078040
Unique NameCX078040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.645e-60
Identity = 114/201 (56.72%), Postives = 144/201 (71.64%), Query Frame = -3
Query:  192 FLGLVKSSL-RPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 791
            +L  VK +L +P   VAAQN + K  GAFTGEISA  L++L + WVILGHSERR  L E +EF+  K  YAL  G+ VI C GE+ + R+AG T++ V  Q  A+A  ++ W N+V+AYEP+WAIGTG VAT  QAQEVH  +R WL  N S ++A  TRI+YGGSVN  NCK+LA + D+DGFLVGGASLKPEF+DII +
Sbjct:   46 YLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGESKDTRQAGETIKFVENQLAALAKEINDWKNVVIAYEPIWAIGTGLVATKEQAQEVHAAIRSWLKQNVSDKVAEETRILYGGSVNAKNCKDLAKEQDIDGFLVGGASLKPEFVDIINA 246          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 1.066e-59
Identity = 114/179 (63.69%), Postives = 135/179 (75.42%), Query Frame = -3
Query:  255 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 791
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  E +E + DKVA+AL++GLKVIAC+GETL++REAG T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S +++A+ RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVKDWSNVVVAYEPVWAIGTGKTATPEQAQEVHVALRKWFTDNVSADVSASIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 229.95 bits (585), Expect = 1.393e-59
Identity = 112/198 (56.57%), Postives = 138/198 (69.70%), Query Frame = -3
Query:  198 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 791
            +L   +  ++    V AQN + KK GA+TGE SA+ L++  I + + GHSERR I  E +EFV DK  +AL QGL V+AC+GETL +REA  T+ VV  Q  AIAD+V +WS IV+AYEPVWAIGTGK ATP QAQEVH E+RKW        +A   R+IYGGSVNG NCKE     D+DGFLVGGASLKPEF +I+
Sbjct:   47 YLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQNWSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLKPEFHNIV 244          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 226.868 bits (577), Expect = 1.179e-58
Identity = 112/188 (59.57%), Postives = 140/188 (74.47%), Query Frame = -3
Query:  192 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 749
            V+AQN + K  GAFTGE+S E L + +I W + GHSERR++L E +EFV  K   A++ GL VI C+GE+LE+REAG T++VV  Q  A+A+ VS   W+ +V+AYEP+WAIGTGKVAT  QAQEVH  +RKWL    SPE A   R+IYGGSV   NC++LAAQPDVDGFLVGGASLKP F+DII +
Sbjct:   60 VSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGESLEEREAGKTIDVVTRQLDAVAEEVSPAEWNKVVIAYEPIWAIGTGKVATTEQAQEVHASIRKWLNEKISPEAAENIRVIYGGSVTENNCRDLAAQPDVDGFLVGGASLKPAFVDIINA 247          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 2.011e-58
Identity = 111/179 (62.01%), Postives = 132/179 (73.74%), Query Frame = -3
Query:  255 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPD 791
            +L L +S L     VAAQNC+    GAFTGEIS  ML +L I WVILGHSERR I  E  E + DK+ +AL++GLKVIAC+GETL++REA  T  V   QTKAIAD+V  WSN+V+AYEPVWAIGTGK ATP QAQEVH  LRKW   N S ++++A RI YGGSV  ANC+ELAA+PD
Sbjct:   28 YLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGETLQEREAAKTEAVCFRQTKAIADKVKDWSNVVIAYEPVWAIGTGKTATPEQAQEVHAALRKWFTENVSADVSSAIRIQYGGSVTAANCRELAAKPD 206          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_LEIME (Triosephosphate isomerase OS=Leishmania mexicana PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.430e-58
Identity = 116/198 (58.59%), Postives = 147/198 (74.24%), Query Frame = -3
Query:  198 LVKSSLR-PGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDII 782
            LV++ LR P + ++A+N  + K GAFTGE+S  +L ++ + WVILGHSERR    E +E V  KV+ A  QG  VIAC+GETL+QREA  T +VV +QT AIA +++  +W+ +VLAYEPVWAIGTGKVATP QAQEVH  LRKW+  N   ++AA  RI+YGGSVN AN   L A+PD++GFLVGGASLKPEF DII
Sbjct:   51 LVQAKLRNPKYVISAENA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKPEFRDII 247          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.430e-58
Identity = 112/188 (59.57%), Postives = 141/188 (75.00%), Query Frame = -3
Query:  192 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 749
            VAAQN + K+ GAFTGEIS + + +  IP+VILGHSERR + +E +E V  K   AL  GLKVI C+GETL++RE G T  V   Q  A+  ++    WSNIV+AYEPVWAIGTGKVAT +QAQE H ++RK+L    SP++A+ TR+IYGGSVN AN K+LA+Q D+DGFLVGGASLKPEF+DII +
Sbjct:   61 VAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEEDWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLKPEFVDIINA 248          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_ASPOR (Triosephosphate isomerase OS=Aspergillus oryzae GN=tpiA PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.430e-58
Identity = 113/188 (60.11%), Postives = 138/188 (73.40%), Query Frame = -3
Query:  192 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 749
            V++QN + K  GAFTGEIS   L + +IPW I+GHSERR+IL E +EF+  KV  A+  G+ VI C+GETLE+REA  T+EVV  Q  A A  ++   WS +V+AYEPVWAIGTGKVAT  QAQEVH  +RKWL    SPE +  TRIIYGGSV+  NC+ELA + DVDGFLVGGASLKP F+DII +
Sbjct:   62 VSSQNVFDKPNGAFTGEISVSQLQDAKIPWTIIGHSERRVILKETDEFIARKVKAAIDGGISVIFCIGETLEEREADKTIEVVTKQLNAAAKELTKEQWSKVVIAYEPVWAIGTGKVATTQQAQEVHAAIRKWLADAISPEASENTRIIYGGSVSEKNCRELAQERDVDGFLVGGASLKPAFVDIINA 249          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 5.851e-58
Identity = 112/200 (56.00%), Postives = 140/200 (70.00%), Query Frame = -3
Query:  192 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 791
            +L   KS L+ G  VAAQNC+    GAFTGEIS  M+ +L + WVILGHSERR +  E +  + +K  +AL  G+KV+ C+GE LE+REAG T +V   Q +AI D+  SW NIV+AYEPVWAIGTGK A+  QAQEVH  +R +L    SP +A ATRIIYGGSV   N  EL  +PD+DGFLVGGASLKP+F+ II +
Sbjct:   46 YLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLKPDFVKIINA 245          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.642e-58
Identity = 114/203 (56.16%), Postives = 137/203 (67.49%), Query Frame = -3
Query:  192 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 791
            +L   +     G  +AA+NC+    GAFTGEIS EM+ +    WVILGHSERR I  E NE +G+KV +AL  GL VI C+GE L +REAG T +V  AQ  AIA  V S   W  +V+AYEPVWAIGTGK ATPAQAQEVH  +R W+  +    IA   RI+YGGSV  +N K+L  QPDVDGFLVGGASLKP+FI II +
Sbjct:   46 YLKYAQDKAPKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGELLSEREAGKTNDVCFAQMDAIAKNVPSKEAWDKVVIAYEPVWAIGTGKTATPAQAQEVHKVVRDWIRKHVDAGIADKVRILYGGSVTASNAKDLGTQPDVDGFLVGGASLKPDFITIINA 248          
The following BLAST results are available for this feature:
BLAST of CX078040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_NEUCR1.645e-6056.72Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_AEDTO1.066e-5963.69Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPIS_SCHPO1.393e-5956.57Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_PARBA1.179e-5859.57Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_CULPI2.011e-5862.01Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]
TPIS_LEIME3.430e-5858.59Triosephosphate isomerase OS=Leishmania mexicana P... [more]
TPIS_COPC73.430e-5859.57Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_ASPOR3.430e-5860.11Triosephosphate isomerase OS=Aspergillus oryzae GN... [more]
TPIS_CAEEL5.851e-5856.00Triosephosphate isomerase OS=Caenorhabditis elegan... [more]
TPIS_TAESO7.642e-5856.16Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F01-K2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078040 ID=CX078040; Name=CX078040; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAAAAAA
AGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATTAT
ACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAAAC
TGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTGAT
GATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCCGT
CAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGGAT
CCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTTGC
AAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGGAG
TGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAACA
ATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCAGC
AACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACCAA
CACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTATCC
CCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGACC
AAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAATCT
CACCGGTGAAAGCACCTCCCTTCTTGACCCAGCAATTCTGTGCCGCAACA
TGAAAGCCAGGCCTCAACGAACTCTTCACCAGTCCAAGAAACACAAACGG
AGGGCTAACAACGACCTCAACGACATCAGAAGATGGAACTTGACCTTCAT
TGAGTACGCTCACTATCT
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