CX078040

Overview
NameCX078040
Unique NameCX078040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.386e-43
Identity = 95/205 (46.34%), Postives = 137/205 (66.83%), Query Frame = -3
Query:  186 FLGLVKSSLRPGFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 791
            +L   +S++     + +QN   ++ GAFTGE+SA ML  +   +VI+GHSERR +  E +  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++ LA   P+IA + R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++AE
Sbjct:   44 YLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQF-LAKDDPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAAE 247          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_PORGI (Triosephosphate isomerase OS=Porphyromonas gingivalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.071e-43
Identity = 95/189 (50.26%), Postives = 127/189 (67.20%), Query Frame = -3
Query:  192 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 749
            VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_PORG3 (Triosephosphate isomerase OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=tpiA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.071e-43
Identity = 95/189 (50.26%), Postives = 127/189 (67.20%), Query Frame = -3
Query:  192 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 749
            VAA+NC  K+ GA+TGE+SA M+ +    +VI+GHSERR   +E +  + +KV  ALS GL  I CVGE LE+REAG   EVVA Q +     +  + ++ ++LAYEPVWAIGTGK AT  QAQE+H  +RK + A    E+A    I+YGGS N AN KEL ++ DVDG L+GGASL   +F+ II++
Sbjct:   62 VAAENCADKESGAYTGEVSAAMVASTGARYVIIGHSERRAYYHETSPILMEKVKLALSNGLTPIFCVGEVLEEREAGKHFEVVARQVEEALFTLDQTDFAKLILAYEPVWAIGTGKTATADQAQEMHAHIRKSIAAKYGKEVANGCSILYGGSCNAANAKELFSRADVDGGLIGGASLSVDKFLPIIEA 250          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_BACV8 (Triosephosphate isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 6.944e-43
Identity = 93/178 (52.25%), Postives = 117/178 (65.73%), Query Frame = -3
Query:  219 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 749
            V A+NC  K  GA+TGE+SAEM+ +    +VILGHSERR   +E  E + +KV  AL+  LK I C+GE LE+REA    EVVAAQ  ++       +S I+LAYEPVWAIGTGK AT  QAQE+H  +R  +      E+A  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   62 VGAENCADKVSGAYTGEVSAEMVASTGAEYVILGHSERRAYYHETVEILEEKVKLALANNLKPIFCIGEVLEEREANKQNEVVAAQLASVFSLSAEDFSKIILAYEPVWAIGTGKTATAEQAQEIHAFIRSLIADKYGKEVADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 9.069e-43
Identity = 98/184 (53.26%), Postives = 116/184 (63.04%), Query Frame = -3
Query:  219 GFHVAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKA----IADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 758
            G  + AQN  V   GAFTGEIS EML ++   +VILGHSERR +  E NE V  KVA A   GL  I CVGETLEQREA  TM+V+  Q  A    +    +    +V+AYEPVWAIGTGKVA+ AQAQE H  +R  L       +A A RI+YGGS+   N KEL  Q DVDG L+GGA+LK
Sbjct:   59 GVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGETLEQREAEQTMQVLEQQLLACLPVLPADAAKQQQLVVAYEPVWAIGTGKVASTAQAQEAHAFIRGLLAKELGANVADAVRILYGGSMKPDNAKELLGQADVDGGLIGGAALK 242          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_JANMA (Triosephosphate isomerase OS=Janthinobacterium sp. (strain Marseille) GN=tpiA PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.184e-42
Identity = 97/190 (51.05%), Postives = 122/190 (64.21%), Query Frame = -3
Query:  189 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 749
            + AQ+    + GA+TGE+S  ML   +  +VI+GHSERR    E NE +  K   AL+ GL  I CVGETL+QREAG T  VVA Q   +   +  S  + IV+AYEPVWAIGTGK ATPA AQEVH  LRK L A  + E A   RI+YGGS+   N KEL A  D+DG L+GGA+LK  +F+ I+ +A
Sbjct:   60 LGAQDVSSHEAGAYTGEVSTSMLQEFDCRYVIVGHSERRAYFAETNELIAQKTVRALNAGLTPIVCVGETLDQREAGQTDSVVAEQLNVVLASIAASDLAKIVVAYEPVWAIGTGKTATPAMAQEVHAMLRKQLQAKNA-EAAMQVRILYGGSMKPENAKELLAMSDIDGGLIGGAALKAADFLAIVHAA 248          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCH (Triosephosphate isomerase OS=Chlorobium chlorochromatii (strain CaD3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.020e-42
Identity = 95/188 (50.53%), Postives = 123/188 (65.43%), Query Frame = -3
Query:  189 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 749
            + AQNC  +  GA+TGE+SA ML       VI+GHSERR    E N  V  +V  AL++GL VI CVGETL +RE+G T ++V+AQ +     VS  SN+V+AYEPVWAIGTGK AT AQA+EVH  +R  +        A A RI YGGSV  +N  EL A P++DG L+GGASL   +F+ I+++A
Sbjct:   62 LVAQNCHYENDGAYTGEVSAAMLKGAGCSSVIIGHSERRQFFGETNATVNLRVKKALAEGLDVILCVGETLAERESGVTGDIVSAQVREGLVGVSDISNVVIAYEPVWAIGTGKTATSAQAEEVHLMIRTLVTELYGEPAAQALRIQYGGSVKPSNAVELFAMPNIDGGLIGGASLNAADFVAIVQAA 249          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_BACTN (Triosephosphate isomerase OS=Bacteroides thetaiotaomicron GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.020e-42
Identity = 92/178 (51.69%), Postives = 117/178 (65.73%), Query Frame = -3
Query:  219 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 749
            V A+NC  K  GA+TGE+SAEM+ +    +VILGHSERR    E    + +KV  AL+ GL  I C+GE LE+REA    EVVAAQ +++       +S I+LAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL + PDVDG L+GGA+LK
Sbjct:   62 VGAENCADKASGAYTGEVSAEMVASTGAKYVILGHSERRAYYGETVAILEEKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQMESVFSLSAEDFSKIILAYEPVWAIGTGKTASPEQAQEIHAFIRSIVADKYGKEIADNTSILYGGSCKPSNAKELFSNPDVDGGLIGGAALK 239          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.446e-42
Identity = 94/188 (50.00%), Postives = 121/188 (64.36%), Query Frame = -3
Query:  189 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 749
            + +QNC   + GA+TGE+SA+M  +++  WVILGHSERR +  E +E +  KV  A+  GL  I CVGETL  RE+G   EV   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR   +    P+IA   RI+YGGSV  +N KEL + PDVDG LVGGASL   EF+ II++A
Sbjct:   60 LGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRN-NIRKHFPQIADKIRILYGGSVKSSNAKELFSMPDVDGALVGGASLVSEEFVSIIEAA 246          
BLAST of CX078040 vs. ExPASy Swiss-Prot
Match: TPIS_METCA (Triosephosphate isomerase OS=Methylococcus capsulatus GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 4.501e-42
Identity = 97/192 (50.52%), Postives = 120/192 (62.50%), Query Frame = -3
Query:  183 VAAQNCWVKKGGAFTGEISAEMLVNLEIPWVILGHSERRLILNELNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMEVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPAQAQEVHFELRKWLLANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 749
            + AQN      GAFTGEISA ML        I+GHSERRL+  E NE V  +   A+   LK I CVGETLEQRE G T+ V+ AQ   + +   V S  + V+AYEPVWA+GTG+ AT  QAQEVH+ +R  L+A  +PE+A A +IIYGGSV   N  EL A PD+DG L+GGASL    F+ I  S  +
Sbjct:   60 LGAQNVADHNSGAFTGEISAGMLREFGCELAIVGHSERRLLYGESNELVASRYEQAIQGHLKPILCVGETLEQREQGRTLAVIGAQIDTVFEFAGVQSLEHAVIAYEPVWAVGTGRSATTGQAQEVHYHIRS-LIARWNPEVAQAVQIIYGGSVKPENSAELFAMPDIDGGLIGGASLDARAFLSICHSVSV 250          
The following BLAST results are available for this feature:
BLAST of CX078040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_ALCBS2.386e-4346.34Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_PORGI4.071e-4350.26Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_PORG34.071e-4350.26Triosephosphate isomerase OS=Porphyromonas gingiva... [more]
TPIS_BACV86.944e-4352.25Triosephosphate isomerase OS=Bacteroides vulgatus ... [more]
TPIS_MAGSM9.069e-4353.26Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_JANMA1.184e-4251.05Triosephosphate isomerase OS=Janthinobacterium sp.... [more]
TPIS_CHLCH2.020e-4250.53Triosephosphate isomerase OS=Chlorobium chlorochro... [more]
TPIS_BACTN2.020e-4251.69Triosephosphate isomerase OS=Bacteroides thetaiota... [more]
TPIS_HAHCH3.446e-4250.00Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_METCA4.501e-4250.52Triosephosphate isomerase OS=Methylococcus capsula... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6F01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6F01-K2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078040 ID=CX078040; Name=CX078040; organism=Citrus sinensis; type=EST; length=868bp
TTTTTTTTTTTTTTTTTAGGAAACAAAGATAATTAAAAAAGTTTAAAAAA
AGGTTTCAGTTGGTCGCGCTTATCAAAAACAAAAGTAATTCTGAAATTAT
ACCAAACGTATTCTATATATCCACAAACAGTAAATACTTCATCAGCAAAC
TGCGCTTGAAATAAAGCTCAAGAATTTTACTTCAGCTCAGCAGATTTGAT
GATGTCAATGAACTCCGGCTTCAACGAAGCACCACCAACCAAAAATCCGT
CAACATCAGGCTGTGCAGCCAATTCCTTGCAGTTTGCACCATTTACGGAT
CCTCCGTAGATGATCCGTGTTGCTGCAGCAATTTCAGGACTGGTGTTTGC
AAGAAGCCATTTCCTCAGTTCAAAATGTACTTCTTGAGCCTGCGCTGGAG
TGGCAACCTTCCCAGTTCCAATAGCCCACACAGGTTCATAGGCCAAAACA
ATGTTTGACCAGCTTGAGACTCGATCTGCGATTGCTTTAGTTTGTGCAGC
AACAACTTCCATAGTAGATCCTGCTTCACGCTGCTCAAGTGTCTCACCAA
CACAAGCAATCACCTTCAAACCTTGAGAAAGTGCATATGCAACCTTATCC
CCAACAAACTCATTTAATTCATTCAAAATGAGTCTCCTTTCAGAATGACC
AAGAATGACCCAAGGAATTTCCAAATTGACGAGCATTTCCGCACTAATCT
CACCGGTGAAAGCACCTCCCTTCTTGACCCAGCAATTCTGTGCCGCAACA
TGAAAGCCAGGCCTCAACGAACTCTTCACCAGTCCAAGAAACACAAACGG
AGGGCTAACAACGACCTCAACGACATCAGAAGATGGAACTTGACCTTCAT
TGAGTACGCTCACTATCT
back to top