CX077970

Overview
NameCX077970
Unique NameCX077970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_PYRKO (Thermosome subunit beta OS=Pyrococcus kodakaraensis GN=thsB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.039e-33
Identity = 82/222 (36.94%), Postives = 131/222 (59.01%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 668
            D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.749e-33
Identity = 81/223 (36.32%), Postives = 129/223 (57.85%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 671
            D  ++AKA GA IV    +L   D+G  A + E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++  L + +  + G E    E  A A + IP+TLA+N G++ +  +  +  +H N     IGID   G  +DM E  I +   VK Q  K+A EAA M+LRIDD+++   K   P  GQ    P
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA--KATKPEGGQGGGMP 538          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.749e-33
Identity = 81/223 (36.32%), Postives = 129/223 (57.85%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKP 671
            D  ++AKA GA IV    +L   D+G  A + E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++++++  ++P GGA E+ ++  L + +  + G E    E  A A + IP+TLA+N G++ +  +  +  +H N     IGID   G  +DM E  I +   VK Q  K+A EAA M+LRIDD+++   K   P  GQ    P
Sbjct:  320 DMEKLAKATGAKIVTNVKDLTPEDLGY-AEVVEERKLAGENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVMEDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEHKN-RGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVIAA--KATKPEGGQGGGMP 538          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.322e-32
Identity = 79/228 (34.65%), Postives = 133/228 (58.33%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETE 686
            D  ++A+A G  +V+  DEL   D+G  A L E +K+G++   F+   K+PKA ++L+RG  + +++E ER L+DA+    ++I++ + V GGGA EL ++  L++ +  I G E+   EA A A E +   L +N G + I  +  L+  H N  N W GI+  TG + DM +  + +   VK    K A EAA ++LRIDD+++  KK ++ G G++ S+ + E +
Sbjct:  327 DLEKLARATGGRVVSNIDELTPQDLGYAA-LVEERKVGEDKMVFVEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVELEIAKRLRKYAPQIGGKEQLAIEAYASALENLVMILIENGGYDPIDLLVKLRSAHENEANKWYGINVFTGQVEDMWKLGVIEPAVVKMNAIKAATEAATLILRIDDLIAAGKKSESKG-GESKSEEKKEED 552          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSA_AERPE (Thermosome subunit alpha OS=Aeropyrum pernix GN=thsA PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 2.255e-32
Identity = 81/227 (35.68%), Postives = 135/227 (59.47%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAI-SDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIE 680
            D  ++AKA GA IV    +L+   +G  A L E +K+G++   FI   K+PK+ T+LLRGA+  LL+E ERN++DA+   RNI++ PK+V GGGA E+ ++  LK+ + ++ G ++   EA A A E IP  LA++ G++ +  +  L+  H+ G   + G++   G I  DM +  +++   VK Q  K+A EAA  +L+IDD+++    K+    G+   + + E
Sbjct:  322 DIEKVAKATGAKIVTSLRDLKPEYLGY-AELVEERKVGEDKMVFIEGAKNPKSVTILLRGANDMLLDEAERNIKDALHGLRNILREPKIVGGGGAVEVELALKLKEFARTVGGKQQLAIEAYAEALETIPTVLAESAGMDALEALLKLRSLHSQGYK-FAGVNVLEGKIEEDMTKINVYEPVLVKKQVIKSASEAAISILKIDDVIAAAPPKKKEKKGKTGEEEEEE 546          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 3.256e-31
Identity = 78/232 (33.62%), Postives = 129/232 (55.60%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 698
            D  ++A+A G  +V+  DEL   D+G  A L E +KIG++   FI   K+PKA ++L+RG  + +++E ER L+DA+    +++++ + + GGGA E  ++  L++ +  + G E+   EA A A E++   L +N G + I  +  L+  H N  N W GI+  TG I DM    + +   VK    K A EA+ ++LRIDD++S  KK +    G+   K + E   + D
Sbjct:  327 DLEKLARATGGRVVSNIDELTSQDLGY-ATLVEERKIGEDKMVFIEGAKNPKAVSILIRGGLERVVDETERALRDALGTVADVVRDGRAIAGGGAVETEIAKRLRKYAPQVGGKEQLAIEAYANALESLVMILIENGGFDPIELLVKLRSAHENETNKWHGINVYTGQIQDMWSLGVIEPAVVKMNAIKAATEASTLILRIDDLISAGKKSE----GKTGEKKESEKGKEED 553          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.256e-31
Identity = 82/229 (35.81%), Postives = 124/229 (54.15%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA--NGENAWIGIDGN-TGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ--APGSGQAPSKPQ 674
            D  R+ KA G+++    + L +  +GT  G+FE ++IG E +    DC   K+ T++LRG ++  + E ER+L DA+ + R  +K  K+VPGGGA EL +S  L+  S   EG  +    A A A E IP+T+A N G + I+ +  L+ KHA  + ++   G+D N    I +  E  +W+   V+   F  A EAAC +L ID+ V   K +Q  AP  G     PQ
Sbjct:  318 DIKRVQKATGSIVQTTVNGLSQDVLGT-CGMFEEQQIGAERYNLFQDCPHSKSATIILRGGAEQFIAEAERSLNDAIMIVRRCMKANKIVPGGGAIELEISRLLRLHSRKTEGKVQLVINAFAKALEVIPKTIADNAGHDSIQVLNKLRQKHALESDQSKNFGVDINAVDGIGNNFENFVWEPIIVRKNAFSAATEAACTILSIDETVRNPKSEQPKAPPGGLRRGGPQ 545          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_THEK8 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-8) GN=thsB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.553e-31
Identity = 79/222 (35.59%), Postives = 131/222 (59.01%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 668
            D  ++AKA GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ ++ ++ + +  + G E+   EA A A + IPRTLA N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A +AA M+LRIDD+++  K ++    G+  ++
Sbjct:  320 DMEKLAKATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELAISVDEYAKEVGGKEQLAIEAFAEALKVIPRTLAGNAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSA-KAAIMILRIDDVIAASKLEKDKEGGKGGTR 538          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.553e-31
Identity = 75/230 (32.61%), Postives = 130/230 (56.52%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 692
            D  ++A+A G  +++  DEL   D+G  A L E +K+G++   F+   K+PK+ ++L+RG  + +++E ER L+DA+    ++I++ + V GGGA E+ ++  L++ +  + G E+   EA A A E +   LA+N G++ I  +  L+  H N  N W G++  TG   DM +  + +   VK    K A EA  ++LRIDDIV+  KK  +  SG+     + ++  D
Sbjct:  326 DLEKLARATGGRVISNIDELTSQDLGYAA-LVEERKVGEDKMVFVEGAKNPKSVSILIRGGLERVVDETERALRDALGTVADVIRDGRAVAGGGAVEIEIAKRLRKYAPQVGGKEQLAIEAYANAIEGLIMILAENAGLDPIDKLMQLRSLHENETNKWYGLNLFTGNPEDMWKLGVIEPALVKMNAVKAATEAVTLVLRIDDIVAAGKKSGSEPSGKKEKDKEEKSSED 554          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 5.553e-31
Identity = 73/206 (35.44%), Postives = 128/206 (62.14%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 620
            D  R+++A GA  V+  ++++ +D+G  AG    K IG +   F+ D ++ K+ T++LRG ++ +++EVER ++D++ V R  +++ +++PGGGA E  ++  L+  + S+ G E+   EA A A E IPRTLA+N G + I ++  L+ +H  G+    G+D   G + DM+   I +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  317 DFTRLSRATGATPVSNVNDIEAADLGA-AGSVAQKDIGGDERIFVEDVEEAKSVTLILRGGTEHVVDEVERAIEDSLGVVRVTLEDGQVMPGGGAPETELAMQLRDFADSVGGREQLAVEAFADALEVIPRTLAENAGHDPIDSLVDLRSQHDGGDTE-AGLDAYNGDVIDMESEGIVEPLRVKTQAIESATEAATMILRIDDVIA 520          
The following BLAST results are available for this feature:
BLAST of CX077970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
THSB_PYRKO2.039e-3336.94Thermosome subunit beta OS=Pyrococcus kodakaraensi... [more]
THSA_THEK17.749e-3336.32Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO7.749e-3336.32Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
THSB_SULTO1.322e-3234.65Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSA_AERPE2.255e-3235.68Thermosome subunit alpha OS=Aeropyrum pernix GN=th... [more]
THSB_SULAC3.256e-3133.62Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
TCPH_TETPY3.256e-3135.81T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
THSB_THEK85.553e-3135.59Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THSB_SULSO5.553e-3132.61Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
THSA_HALSA5.553e-3135.44Thermosome subunit alpha OS=Halobacterium salinari... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077970 ID=CX077970; Name=CX077970; organism=Citrus sinensis; type=EST; length=815bp
CAGACAATAATAGAATTGCCAAAGCATGTGGCGCTGTTATTGTGAACAGA
CCAGATGAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGA
GGTTAAGAAAATTGGGGATGAATTCTTTGCATTCATTGTTGATTGCAAAG
ATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTG
AATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACAT
AATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACAG
TGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAG
TGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTTT
GGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAAG
GAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACACT
GGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATGT
GAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTGA
GGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCA
GGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATAG
TGAGCAAATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAGT
TTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGA
TTTTGCTGAGCTTTT
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