CX077970

Overview
NameCX077970
Unique NameCX077970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.153e-26
Identity = 77/216 (35.65%), Postives = 122/216 (56.48%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISD-MKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAP 644
            D   +++A GA I +   +  ESD+G  A L EV+ +G   + FI   K  KA TV+++G++  + +E ER+L DA +  RN++  P +V GGGA E  ++  L+  +  + G E+  + A A A E     L++  G++ I  +T ++ KHA G +NA  GID     I D M E ++ D+  VK Q  K+A EAA  +L+IDD+++    KQ P
Sbjct:  314 DIELLSRATGAKIASSMKDANESDLGE-AKLVEVRNLGKNKYLFIQSDK-AKAVTVIIKGSNNMITDEAERSLNDAFNSIRNLLLEPYIVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA--GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMIAAAPAKQQP 525          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPW_BOVIN (T-complex protein 1 subunit zeta-2 OS=Bos taurus GN=CCT6B PE=2 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.118e-26
Identity = 66/202 (32.67%), Postives = 114/202 (56.44%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R++ ACG V VN  ++L    +G  AGL     +G+E + FI DC +P++ T+L++G +K  L +++  ++D +   +N I++  +VPG GA E+ ++  L     +I+G  +   +A A A   IP+ LAQN G ++  T+  +Q +H+N +   +GID NTG      +  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLSLACGGVAVNSVEDLSVDCLGH-AGLVYEYTLGEEKYTFIEDCINPRSVTLLVKGPNKHTLTQIKDAVRDGLRAIKNAIEDGCVVPGAGAVEVVIAEALVTYKHTIQGRARLGVQAFADALLIIPKVLAQNSGYDLQETLVKVQAEHSNSKQP-VGIDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_PONAB (T-complex protein 1 subunit zeta OS=Pongo abelii GN=CCT6 PE=2 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.565e-25
Identity = 66/202 (32.67%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG V +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   RN I +  +VPG GA E+ ++  L +   S++G  +   +A A A   IP+ LAQN G ++  T+  +Q +H+      +G+D NTG      E  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLTLACGGVALNSFDDLSPDQLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVRNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSE-SGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.565e-25
Identity = 71/221 (32.13%), Postives = 118/221 (53.39%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHA-NGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAP 662
            D  R A A GA++      L +  +GT  G+FE  +IG+E +    +C   K+ T++LRG +K  + EVER++ DA+ +    I N ++VPG G+ E+ +S  L+  S SI   E+    + A A E+IPR L+ N G +    +  L+ KH+    + W G+D   G I +  +  I++   +K     +A EAAC++L ID+ +       A G+ ++P
Sbjct:  320 DLKRTANATGALVQTSLFNLNDDVLGT-CGVFEEVQIGNERYNIFKECLKTKSVTIILRGGAKQFIEEVERSINDAIMIVLRCITNSEIVPGAGSIEMQLSKYLRIYSRSICNKEQIVLFSFAKALESIPRHLSHNAGYDSTDILNKLRKKHSEQTSDIWYGVDCMEGDIINAYDNCIFEVTKIKRNVIYSATEAACLILSIDETIK--NPSSAAGTQRSP 537          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.044e-25
Identity = 65/196 (33.16%), Postives = 114/196 (58.16%), Query Frame = 3
Query:   33 AVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 620
            A +V   D   E+DV  G+     +   DE F    + +     T+LLRG++  +++E+ER + DA+ V+   + + +++PGGGATE+ V++ L+  + S+ G E+   EA A + E +PR LA+N G++ I T+  L+  H N ++  IG++  +G + D  E  + +  + K Q   +A EAA ++L+IDDI+S
Sbjct:  334 ASVVTDLDAASEADVVAGS---VTRDSDDELFYVEGESEQAHGVTLLLRGSTDHVVDELERGVSDALDVSAQTLSDGRVLPGGGATEVEVASRLRDFADSVSGREQLAVEAFADSLELVPRVLAENAGLDSIDTLVDLRSAHENDDDEHIGLNVLSGDLEDTFEAGVVEPAHAKEQAVTSASEAANLVLKIDDIIS 526          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_BOVIN (T-complex protein 1 subunit zeta OS=Bos taurus GN=CCT6A PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 65/202 (32.18%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG + +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G  +   +A A A   IP+ LAQN G ++  T+  +Q +H+      +G+D NTG      E  IWD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLTLACGGIALNSLDDLNPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALVKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE-SGQLVGVDLNTGEPMVAAEAGIWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPW_MOUSE (T-complex protein 1 subunit zeta-2 OS=Mus musculus GN=Cct6b PE=2 SV=4)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 68/202 (33.66%), Postives = 109/202 (53.96%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG + VN  + L E  +G    +FE   +G+E F FI DC +P + T+L++G +K  L +++  L+D +   +N I++  +VPG GA E+ ++  L      ++G  +   +A A A   IP+ LAQN G ++  T+  +Q KHA  +   +GID NTG      E  IWD Y VK     +    A  +L +D+I+
Sbjct:  323 RLTLACGGLAVNSFEGLSEECLGHAGLVFEYA-LGEEKFTFIEDCVNPLSVTLLVKGPNKHTLIQIKDALRDGLRAVKNAIEDGCVVPGAGAVEVAIAEALVNYKHRVQGRVRLGIQAFADALLIIPKVLAQNSGYDLQETLIKIQTKHAESKEL-LGIDLNTGEPMAAAEAGIWDNYCVKKHLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.669e-25
Identity = 70/222 (31.53%), Postives = 123/222 (55.41%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG----DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 656
            D  +IA A G  IV R +++    +G  AGL  V+++G     + +  I DC +  A T+ +RG +K ++ E +R++ DA+ V RN+I++ +++ GGG++E++    +   +  I  IE++   A A A +AIP  LA+N G+  I +++ ++      +N  +GID N    +DMK   ++D    K Q F  A +   M+L+IDDI+     K  PG+ +
Sbjct:  325 DLEKIAMATGGRIVARFEDVSADKLGR-AGL--VREVGFGTTQDRYLSIEDCPNTNAVTIFVRGGNKMIVEEAKRSIHDALCVTRNLIRDNRVIYGGGSSEISCGLKISAMADDIASIEQYAVRAFADALDAIPLALAENSGLPSIESLSTVKAMQIKEKNPRLGIDCNHRDTNDMKAQHVFDTLPGKTQQFLLANQVVKMILKIDDII-----KMGPGADE 538          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.947e-25
Identity = 68/202 (33.66%), Postives = 113/202 (55.94%), Query Frame = 3
Query:   15 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIG--DEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 614
            +A A  A IV R  EL +  +GT AGL      G   +    I  C + KA T+ +RG +K +++E +R L DA+ V RN++++ ++V GGG+ EL  +  + +++  I+GIE++ + A A A E+IP  LA+N G+  I  ++ L+ K      + +GID      +DMKE K+ +    K +    A +   M+L+IDD+
Sbjct:  332 LAIATNARIVPRFSELSKEKLGT-AGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMIIDEAKRALHDALCVIRNLVRDSRIVYGGGSAELAAAIQVAKEADRIDGIEQYAFRAFADALESIPMALAENSGLAPIDALSDLKAKQIETGKSSLGIDAVFAGTNDMKEQKVIETLLSKREQISLATQVVRMILKIDDV 532          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_HUMAN (T-complex protein 1 subunit zeta OS=Homo sapiens GN=CCT6A PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.767e-25
Identity = 65/202 (32.18%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG V +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G  +   +A A A   IP+ LAQN G ++  T+  +Q +H+      +G+D NTG      E  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLTLACGGVALNSFDDLSPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAVRDGLRAVKNAIDDGCVVPGAGAVEVAMAEALIKHKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKIQAEHSE-SGQLVGVDLNTGEPMVAAEVGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
The following BLAST results are available for this feature:
BLAST of CX077970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
THSG_SULSO3.153e-2635.65Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPW_BOVIN4.118e-2632.67T-complex protein 1 subunit zeta-2 OS=Bos taurus G... [more]
TCPZ_PONAB1.565e-2532.67T-complex protein 1 subunit zeta OS=Pongo abelii G... [more]
TCPH_PLAF71.565e-2532.13T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
THSB_HALSA2.044e-2533.16Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPZ_BOVIN2.669e-2532.18T-complex protein 1 subunit zeta OS=Bos taurus GN=... [more]
TCPW_MOUSE2.669e-2533.66T-complex protein 1 subunit zeta-2 OS=Mus musculus... [more]
TCPE_DICDI2.669e-2531.53T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPE_CAEEL5.947e-2533.66T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPZ_HUMAN7.767e-2532.18T-complex protein 1 subunit zeta OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077970 ID=CX077970; Name=CX077970; organism=Citrus sinensis; type=EST; length=815bp
CAGACAATAATAGAATTGCCAAAGCATGTGGCGCTGTTATTGTGAACAGA
CCAGATGAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGA
GGTTAAGAAAATTGGGGATGAATTCTTTGCATTCATTGTTGATTGCAAAG
ATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTG
AATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACAT
AATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACAG
TGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAG
TGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTTT
GGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAAG
GAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACACT
GGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATGT
GAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTGA
GGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCA
GGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATAG
TGAGCAAATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAGT
TTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGA
TTTTGCTGAGCTTTT
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