CX077970

Overview
NameCX077970
Unique NameCX077970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_DICDI (T-complex protein 1 subunit zeta OS=Dictyostelium discoideum GN=cct6 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.855e-24
Identity = 65/206 (31.55%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 629
            R+  ACG   +N  ++L    +G    ++E + +G+E + F+   K+P +CTVL++G +K  + +++  L+D +   +N I++  +VPGGGA ++   A L +   +I G  K   +A A A   +P+TLAQN G + + T+  LQ ++A G    +G+D  +G   D     I+D Y+V  Q ++++   A  LL ID+I+   K
Sbjct:  325 RLTLACGGTAMNSLEDLTPDCLGHADLVYE-QTLGEEKYTFVEGVKNPFSCTVLIKGPTKHQIEQIKDALRDGLRAVKNTIEDKCVVPGGGAFQIAAYADLMKFKETITGRTKLGIQAFADALLVVPKTLAQNSGFDPMDTIIKLQEEYAKGH--IVGLDVESGEPMDPVSEGIFDQYSVLKQVYRSSPVIASQLLLIDEIIKAGK 527          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_CHICK (T-complex protein 1 subunit zeta OS=Gallus gallus GN=CCT6 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.855e-24
Identity = 64/202 (31.68%), Postives = 108/202 (53.47%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG   +N  ++L    +G  AGL     +G+E + FI  C +P++ T+L+RG +K  L +++  ++D +   +N I++  ++PG GA E+ V+  L +   +++G  +   +A A A   IP+ LAQN G +   T+  +Q +HA       G+D NTG         IWD YNVK Q   +    A  +L +D+I+
Sbjct:  322 RLTLACGGTAMNSVEDLTPDCLGH-AGLVYEYTLGEEKYTFIEKCDNPRSVTLLIRGPNKHTLTQIKDAVRDGLRAVKNAIEDGCVIPGAGALEVAVANALVKHKPNVKGRAQLGVQAFADALLIIPKVLAQNSGYDPQETLVKVQAEHAE-SGQLTGVDLNTGEPMVAAAAGIWDNYNVKKQLLHSCTVIASNILLVDEIM 521          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPW_HUMAN (T-complex protein 1 subunit zeta-2 OS=Homo sapiens GN=CCT6B PE=1 SV=4)

HSP 1 Score: 112.079 bits (279), Expect = 3.855e-24
Identity = 65/202 (32.18%), Postives = 111/202 (54.95%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R++ ACG + VN  ++L    +G  AGL     +G+E F FI +C +P + T+L++G +K  L +V+  ++D +   +N I++  +VPG GA E+ ++  L    +SI+G  +   +A A A   IP+ LAQN G +   T+  +Q +H   +   +G+D NTG      +  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLSLACGGMAVNSFEDLTVDCLGH-AGLVYEYTLGEEKFTFIEECVNPCSVTLLVKGPNKHTLTQVKDAIRDGLRAIKNAIEDGCMVPGAGAIEVAMAEALVTYKNSIKGRARLGVQAFADALLIIPKVLAQNAGYDPQETLVKVQAEHVESKQL-VGVDLNTGEPMVAADAGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.855e-24
Identity = 68/210 (32.38%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQA 641
            R+A   G  IV+  D  Q +  G+   L E   IG++        K  +AC+V+LRGA++ +L+E ER+L DA+ V    +K  K V G GA+E+ +S+ +  ++  + G E    EA   A   +P  +  N G++    +T L+ +HANG +  +GID   G ++D+ +  + ++YNVK     +A EA   +LR+DDI+    + +A
Sbjct:  316 RLALVLGGEIVSTFDSPQTAQFGS-CDLIEEIMIGEDRLLRFSGVKLGEACSVVLRGATQQILDESERSLHDALCVLVTHVKESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHANGRHN-MGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIKAAPRARA 523          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPZ_MOUSE (T-complex protein 1 subunit zeta OS=Mus musculus GN=Cct6a PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 6.575e-24
Identity = 63/202 (31.19%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   12 RIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            R+  ACG + +N  D+L    +G  AGL     +G+E F FI  C +P++ T+L++G +K  L +++  ++D +   +N I +  +VPG GA E+ ++  L +   S++G  +   +A A A   IP+ LAQN G ++  T+  +Q +H+      +G+D +TG      E  +WD Y VK Q   +    A  +L +D+I+
Sbjct:  323 RLTLACGGIALNSFDDLNPDCLGH-AGLVYEYTLGEEKFTFIEKCNNPRSVTLLVKGPNKHTLTQIKDAIRDGLRAVKNAIDDGCVVPGAGAVEVALAEALIKYKPSVKGRAQLGVQAFADALLIIPKVLAQNSGFDLQETLVKVQAEHSE-SGQLVGVDLSTGEPMVAAEMGVWDNYCVKKQLLHSCTVIATNILLVDEIM 522          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 6.575e-24
Identity = 62/178 (34.83%), Postives = 104/178 (58.43%), Query Frame = 3
Query:   99 EVKKIGDEFFAFIVDCKDP-KACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 629
            E+   GD     +   ++P  A ++LLRG++K +L E +R++ DA+ V R ++K   L+PGGGA E+ ++  L+  + +  G  ++ + A A A E IP TLA+N G++ I T+T L+  HANG +++ G++   G ++DM E  +     V A   K A E    +L+IDDIV  ++
Sbjct:  364 EIPTGGDGKVIKVTGVQNPGHAVSILLRGSNKLVLEEADRSIHDALCVIRCLVKKKALLPGGGAPEMEIAVKLRNLAQTQHGATQYCWRAFADALELIPYTLAENAGLSPIHTVTELRNNHANGNSSY-GVNVRKGYVTDMVEEDVVQPLLVTASAIKQASECVRSILKIDDIVMAVR 540          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPQ_MOUSE (T-complex protein 1 subunit theta OS=Mus musculus GN=Cct8 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.913e-23
Identity = 67/232 (28.88%), Postives = 120/232 (51.72%), Query Frame = 3
Query:    3 DNNRIAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD-EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANG-ENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEAD 692
            D  R+ K  GA  + +     + ++G    ++ + ++GD +   F  + +D    T++LRG++ +L++++ER + D ++  + + ++ +LVPGGGATE+ ++  +     +  G+E++  +  A AFEAIPR LA+N GV     ++ L   H  G +N  + I+    A+ DM E  I D Y  K    K A  AA  +LR+D I+        P  G  P   + + + D
Sbjct:  320 DLRRLCKTVGATALPKLTPPVQEEMGHCDSVY-LSEVGDTQVVVFKHEKEDGAISTIVLRGSTDNLMDDIERAVDDGVNTFKVLTRDKRLVPGGGATEIELAKQITSYGETCPGLEQYAIKKFAEAFEAIPRALAENSGVKANEVISKLYSVHQEGNKNVGLDIEAEVPAVKDMLEASILDTYLGKYWAIKLATNAAVTVLRVDQIIMA-----KPAGGPKPPSGKKDWDDD 545          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.913e-23
Identity = 65/203 (32.02%), Postives = 115/203 (56.65%), Query Frame = 3
Query:   15 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIV 617
            IA A    IV R ++L    +G+ AG+      G   +    I  C + +A TV +RG++K +++E +R L DA+ V RN+I++ ++V GGGA E++ S  + +++  I GI+++   A A A + IP  LA+N G++ I  +TA++ +H     A++GID      +DM++  + D    K Q    A +   M+L+++DI+
Sbjct:  335 IAIATNGRIVPRFEDLSSDKLGS-AGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.913e-23
Identity = 67/202 (33.17%), Postives = 110/202 (54.46%), Query Frame = 3
Query:   15 IAKACGAVIVNRPDELQESDVGTGAGLFEVKKIGD--EFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 614
            IA A G  IV R  EL    +G  AG+ +    G   +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++   A A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  333 IAIATGGRIVPRFSELTSEKLGF-AGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
BLAST of CX077970 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.499e-23
Identity = 65/201 (32.34%), Postives = 108/201 (53.73%), Query Frame = 3
Query:   15 IAKACGAVIVNRPDELQESDVGTGAGLFEVK-KIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDI 614
            IA A G  IV R  EL    +G    + E+      +    I  CK+ +A T+ +RG +K ++ E +R+L DA+ V RN+I++ ++V GGGA E++ +  + Q++     +E++   A A A E IP  L++N G+N I+TMT ++ +     N  +GID      +DM+   + +    K Q    A +   M+L+IDDI
Sbjct:  333 IAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKCPTLEQYAMRAFADALEVIPMALSENSGMNPIQTMTEVRARQVKESNPALGIDCLHKGSNDMQYQHVIETLIGKKQQISLATQMVRMILKIDDI 533          
The following BLAST results are available for this feature:
BLAST of CX077970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
TCPZ_DICDI3.855e-2431.55T-complex protein 1 subunit zeta OS=Dictyostelium ... [more]
TCPZ_CHICK3.855e-2431.68T-complex protein 1 subunit zeta OS=Gallus gallus ... [more]
TCPW_HUMAN3.855e-2432.18T-complex protein 1 subunit zeta-2 OS=Homo sapiens... [more]
TCPB_CAEEL3.855e-2432.38T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPZ_MOUSE6.575e-2431.19T-complex protein 1 subunit zeta OS=Mus musculus G... [more]
TCPD_CAEEL6.575e-2434.83T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPQ_MOUSE1.913e-2328.88T-complex protein 1 subunit theta OS=Mus musculus ... [more]
TCPE_SCHPO1.913e-2332.02T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPE_MOUSE1.913e-2333.17T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_RAT2.499e-2332.34T-complex protein 1 subunit epsilon OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077970 ID=CX077970; Name=CX077970; organism=Citrus sinensis; type=EST; length=815bp
CAGACAATAATAGAATTGCCAAAGCATGTGGCGCTGTTATTGTGAACAGA
CCAGATGAATTGCAGGAATCTGATGTTGGTACTGGGGCTGGGCTGTTTGA
GGTTAAGAAAATTGGGGATGAATTCTTTGCATTCATTGTTGATTGCAAAG
ATCCAAAAGCTTGTACTGTACTCTTAAGAGGTGCTAGTAAGGATCTCCTG
AATGAAGTGGAAAGGAATTTGCAGGATGCAATGTCTGTGGCAAGAAACAT
AATCAAGAATCCAAAACTAGTACCTGGTGGTGGGGCTACAGAATTAACAG
TGTCTGCCACTCTAAAACAAAAGAGTTCCTCAATCGAAGGCATCGAAAAG
TGGCCTTACGAAGCTGCTGCTATTGCTTTTGAGGCTATTCCAAGAACTTT
GGCTCAGAATTGTGGCGTTAATGTAATTCGGACTATGACTGCTCTGCAAG
GAAAACATGCAAATGGTGAAAATGCATGGATTGGCATAGATGGAAACACT
GGTGCAATTTCTGACATGAAAGAGGGGAAGATCTGGGATGCATATAATGT
GAAAGCACAGACATTTAAGACAGCAATTGAAGCTGCTTGCATGCTTCTGA
GGATTGATGACATTGTCAGTGGAATTAAGAAGAAACAGGCCCCTGGCTCA
GGCCAAGCTCCATCGAAGCCCCAGATTGAGACGGAGGCAGATGCAGATAG
TGAGCAAATACTCCATGATTAGACAATGTTATTGTCAACGACTATGCAGT
TTAATTATTTGAAAAAATGTTGGTTTATTGTTCTGTTGGCGGTCTAATGA
TTTTGCTGAGCTTTT
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