CX077969

Overview
NameCX077969
Unique NameCX077969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.132e-34
Identity = 83/211 (39.34%), Postives = 127/211 (60.19%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 886
            A GA IV   D+L  S +G  A   E +KIGD+   F++ CK+PKA ++L+RG +  +++EVER L DA+ V     ++ K + GGGA E  ++  L + ++S+ G E+   EA A A E IPRTLA+N G++ I T+  L+ +H  G  + +G+D +   + DMK   + D   VK    ++A+E A M+LRIDD+++   KK  P SGQ
Sbjct:  324 ATGAKIVTDLDDLTPSVLGE-AETVEERKIGDDRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMRLAKYANSVGGREQLAIEAFAKALEIIPRTLAENAGIDPINTLIKLKAEHEKGRIS-VGVDLDNNGVGDMKAKGVVDPLRVKTHALESAVEVATMILRIDDVIA--SKKSTPPSGQ 530          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.046e-33
Identity = 82/225 (36.44%), Postives = 131/225 (58.22%), Query Frame = -1
Query:  212 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 886
            A GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++ GGGA+E+ +S  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IGID   G  +DM E  + +   VK Q  K+A EAA M+LRIDD+++  K ++     +     +    +D D
Sbjct:  327 ATGAKIVTNIRDLTPEDLGE-AELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAIKVVKDILEDGKIIAGGGASEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGQTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAASKLEKEKEGEKGGGSEEFSGSSDLD 549          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 1.046e-33
Identity = 84/226 (37.17%), Postives = 131/226 (57.96%), Query Frame = -1
Query:  212 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK-KKQAPGSGQAPSKPQIETEADAD 886
            A GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++ GGGA E+ +S  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IGID   G  +DM E  + +   VK Q  K+A EAA M+LRIDD+++  K +K+  G           + +D D
Sbjct:  327 ATGAKIVTNIRDLTPEDLGE-AELVEERKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDILEDGKIIAGGGAAEIELSIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGIDVYEGEPADMMERGVIEPVRVKKQAIKSASEAAIMILRIDDVIAAQKLEKEKEGEKGGGGSEDFSSSSDLD 550          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THSB_AERPE (Thermosome subunit beta OS=Aeropyrum pernix GN=thsB PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.046e-33
Identity = 80/205 (39.02%), Postives = 121/205 (59.02%), Query Frame = -1
Query:  272 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQ 886
            A GA IV   ++L+  D+G  A L E +K+G++   FI   K+PK+ T+LLRG  + L++E ER+L DA+SV  + I + K+V GGGA E  V+  L + +S + G  +   EA A A EA+P+ LA N G + I  +  L+  H   EN W G+D +TG I DM    + +   VK    K A E A ++LRIDD+++  K+++
Sbjct:  334 ATGARIVTDIEDLRPEDLGY-AELVEERKVGEDKMVFIEGAKNPKSVTILLRGGFERLVDEAERSLHDALSVVADAIMDGKIVAGGGAVEAEVAKVLYEYASKLPGKTQLAVEAFARAVEALPQALAHNAGHDPIEVLVKLRSAHEKPENKWYGVDLDTGEIVDMWSRGVLEPMRVKLNALKAATEVASLILRIDDVIAARKEEE 537          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.046e-33
Identity = 78/199 (39.20%), Postives = 126/199 (63.32%), Query Frame = -1
Query:  290 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 886
            A GA +V   D+L   D+G    ++E KKI DE   FI +C+DPKA +++LRG++K +  E+ER L+DA+ V  + +++ ++V GGGA E+ ++  L++ + +I G E+    A A A E +P+TLA+N G++ I  +  L+  H   E+ ++GID   G I DMKE  + +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  320 ATGARLVTNIDDLTAEDLGEAGVIYE-KKIFDEVLTFIEECRDPKAISIILRGSTKHVAEEMERALEDAIGVVASTLEDREVVAGGGAPEVEIARKLREYADTISGREQLAVSAFADALEIVPKTLAENAGLDSIDVLVDLRAAHE--ESPYMGIDVFDGNIVDMKEAGVIEPQRVKKQAIQSAAEAAEMILRIDDMIA 515          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.156e-32
Identity = 79/211 (37.44%), Postives = 122/211 (57.82%), Query Frame = -1
Query:  254 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQ 886
            A GA IV + D+L   D+G  AGL E +K+  +   F+  CK PKA T+L RG+++ ++ EV R + DA+ V +  ++  K+V GGGATE+ ++  L++ + S+ G E+   +A A A E IPRTLA+N G++ I  +  L+  H        G+D   G + DM E  + +   VK Q   +A EA+ MLLRIDD+++  K K     G+
Sbjct:  324 ATGARIVTKIDDLTPEDLGE-AGLVEERKVAGDAMIFVEQCKHPKAVTILARGSTEHVVEEVARAIDDAIGVVKCALEEGKIVAGGGATEIELAKRLRKFAESVAGREQLAVKAFADALEVIPRTLAENSGLDPIDMLVKLRAAHEKEGGEVYGLDVFEGEVVDMLEKGVVEPLKVKTQAIDSATEASVMLLRIDDVIAAEKVKGDEKGGE 533          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.972e-32
Identity = 74/199 (37.19%), Postives = 127/199 (63.82%), Query Frame = -1
Query:  290 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVS 886
            A G  +V+  D+++  D+G  AG    K +G +   F+ D +D K+ T++LRG ++ +++E+ER ++D++ V R  +++ K++PGGGA E  +S  L++ + S+ G E+   EA A A + IPRTLA+N G++ I ++  L+ +H  GE A  G+D  TG + DM+E  + +   VK Q  ++A EAA M+LRIDD+++
Sbjct:  325 ATGGRVVSSLDDIEADDLGF-AGSVGQKDVGGDERIFVEDVEDAKSVTLILRGGTEHVVDELERAIEDSLGVVRTTLEDGKVLPGGGAPETELSLQLREFADSVGGREQLAVEAFAEALDIIPRTLAENAGLDPIDSLVDLRSRHDGGEFA-AGLDAYTGEVIDMEEEGVVEPLRVKTQAIESATEAAVMILRIDDVIA 521          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THSB_THEK1 (Thermosome subunit beta OS=Thermococcus sp. (strain KS-1) GN=thsB PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.789e-32
Identity = 80/215 (37.21%), Postives = 126/215 (58.60%), Query Frame = -1
Query:  242 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSK 886
            A GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K+V  GGA E+ +S  L + +  + G E+   EA A A + IPRTLA+N G++ I T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K ++    G+  S+
Sbjct:  327 ATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKIVAAGGAPEIELSIRLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPIETLVKVIAAHKE-KGPTIGVDVFEGEPADMLERGVIAPVRVPKQAIKSASEAAIMILRIDDVIAASKLEKDKEGGKGGSE 539          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 76/202 (37.62%), Postives = 121/202 (59.90%), Query Frame = -1
Query:  281 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIK 886
            A GA IV    +L   D+G  A L E +K+  E   F+  CK+PKA T+L+RG ++ +++EVER L+DA+ V ++I+++ K++P GGA E+ ++  L + +  + G E+   EA A A + IPRTLA+N G++ + T+  +   H   +   IG+D   G  +DM E  +     V  Q  K+A EAA M+LRIDD+++  K
Sbjct:  327 ATGAKIVTNVRDLTPEDLGE-AELVEQRKVAGENMIFVEGCKNPKAVTILIRGGTEHVVDEVERALEDAVKVVKDIVEDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAHKE-KGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of CX077969 vs. ExPASy Swiss-Prot
Match: THSB_THEAC (Thermosome subunit beta OS=Thermoplasma acidophilum GN=thsB PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.181e-31
Identity = 77/225 (34.22%), Postives = 131/225 (58.22%), Query Frame = -1
Query:  212 ACGAVIVNRPDELQESDVGTGAGLFEVKKIGDEFFAFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMSVARNIIKNPKLVPGGGATELTVSATLKQKSSSIEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWIGIDGNTGAISDMKEGKIWDAYNVKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGSGQAPSKPQIETEADAD 886
            A GA IV+  DE+  SD+GT   + +VK +G+++  F+  CK+PKA ++L+RG ++ +++E+ER++ D++ V  + +++     GGGAT   ++  L+  +  I G ++   E  A A E IPR LA+N G++ I  +  L+ +HA G N   GI+  TG I DM +  + +   V  Q  ++A EAA M+LRIDD+++     ++  S   P K    +E+  D
Sbjct:  325 ATGASIVSTIDEISSSDLGTAERVEQVK-VGEDYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASALEDGAYAAGGGATAAEIAFRLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAKG-NKTYGINVFTGEIEDMVKNGVIEPIRVGKQAIESATEAAIMILRIDDVIA----TKSSSSSSNPPKSGSSSESSED 543          
The following BLAST results are available for this feature:
BLAST of CX077969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
THSA_THEAC6.132e-3439.34Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
THS_PYRHO1.046e-3336.44Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THS_PYRAB1.046e-3337.17Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSB_AERPE1.046e-3339.02Thermosome subunit beta OS=Aeropyrum pernix GN=ths... [more]
THSA_METTH1.046e-3339.20Thermosome subunit alpha OS=Methanobacterium therm... [more]
THS_METJA1.156e-3237.44Thermosome subunit OS=Methanocaldococcus jannaschi... [more]
THS1_HALVO1.972e-3237.19Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
THSB_THEK19.789e-3237.21Thermosome subunit beta OS=Thermococcus sp. (strai... [more]
THS_DESSY2.181e-3137.62Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THSB_THEAC2.181e-3134.22Thermosome subunit beta OS=Thermoplasma acidophilu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6B05-C10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077969 ID=CX077969; Name=CX077969; organism=Citrus sinensis; type=EST; length=886bp
CTTAAAATATATATATATATTGCAGAGCATATCACAGCTTCCCAGTTTGT
CTACAATGGCTAAAACATTGGCGCAATATCACAAAATTTGGAGGAAAAGC
TCAGCAAAATCATTAGACCGCCAACAGAACAATAAACCAACATTTTTTCA
AATAATTAAACTGCATAGTCGTTGACAATAACATTGTCTAATCATGGAGT
ATTTGCTCACTATCTGCATCTGCCTCCGTCTCAATCTGGGGCTTCGATGG
AGCTTGGCCTGAGCCAGGGGCCTGTTTCTTCTTAATTCCACTGACAATGT
CATCAATCCTCAGAAGCATGCAAGCAGCTTCAATTGCTGTCTTAAATGTC
TGTGCTTTCACATTATATGCATCCCAGATCTTCCCCTCTTTCATGTCAGA
AATTGCACCAGTGTTTCCATCTATGCCAATCCATGCATTTTCACCATTTG
CATGTTTTCCTTGCAGAGCAGTCATAGTCCGAATTACATTAACGCCACAA
TTCTGAGCCAAAGTTCTTGGAATAGCCTCAAAAGCAATAGCAGCAGCTTC
GTAAGGCCACTTTTCGATGCCTTCGATTGAGGAACTCTTTTGTTTTAGAG
TGGCAGACACTGTTAATTCTGTAGCCCCACCACCAGGTACTAGTTTTGGA
TTCTTGATTATGTTTCTTGCCACAGACATTGCATCCTGCAAATTCCTTTC
CACTTCATTCAGGAGATCCTTACTAGCACCTCTTAAGAGTACAGTACAAG
CTTTTGGATCTTTGCAATCAACAATGAATGCAAAGAATTCATCCCCAATT
TTCTTAACCTCAAACAGCCCAGCCCCAGTACCAACATCAGATTCCTGCAA
TTCATCTGGTCTGTTCACAATAACAGCGCCACATGC
back to top