CX077960

Overview
NameCX077960
Unique NameCX077960
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length733
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MY113_ARATH (Transcription factor MYB113 OS=Arabidopsis thaliana GN=MYB113 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.713e-21
Identity = 44/70 (62.86%), Postives = 50/70 (71.43%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK 211
            L RC KSCRLRW NYL+P IKRG     E  +++ L  LLGNRW+ IA  LP RT ND+KNYWNTHL KK
Sbjct:   42 LNRCRKSCRLRWLNYLKPSIKRGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK 111          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.269e-20
Identity = 48/97 (49.48%), Postives = 67/97 (69.07%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWN-THLKKKVRKLQLAAAGCSEDNSQYRDELASAS 289
            L R  KSCRLRW NYLRP ++RGN T +E+ +I+ L A  GNRW+ IA +LP RTDN+IKNYWN T ++K +++ + +  G    N ++ +E AS S
Sbjct:   47 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIKQAEASFIG--HINPEHSNEQASTS 141          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 220
            L R  KSCRLRW NYL PG+K G  + +EE +II L A  GNRW+ IA  LP RTDN+IKNYW TH++KK ++
Sbjct:   42 LNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.296e-20
Identity = 44/75 (58.67%), Postives = 56/75 (74.67%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQ 226
            L R  KSCRLRW NYLRPG+KR   + +EE+ I+   + LGN+W+ IA +LP RTDN+IKNYW++HLKKK  K Q
Sbjct:   44 LQRNGKSCRLRWINYLRPGLKRDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQ 118          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.392e-19
Identity = 47/103 (45.63%), Postives = 65/103 (63.11%), Query Frame = 2
Query:    2 LLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELAS--ASSQQIS 304
            L R  KSCRLRW NYLRP ++RGN T +E+ +I+ L A  GNRW+ IA  LP RTDN+IKNYW T ++K + +   +++    +     D   +  ASS Q+S
Sbjct:   47 LKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQGDQSSSTTFNNGQMNLDHSCNDQASSSQMS 149          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = 2
Query:   20 SCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNSQYRDELASASSQ 295
            SCR RW N+L+P +K+G FTD+EEK ++ L A+LGN+W+ +A   P RTDN+IKN+WN       R+++L   G      + R++    ++Q
Sbjct:   56 SCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWN------ARRMRLKGKGLPVYPDEVREQAIRTAAQ 141          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.515e-16
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 2
Query:    8 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK---LQLAAAGCSED 253
            R  K CR RW N+L P +K+ ++T++E+++I     +LGNRWA IA  LP RTDN +KN+WN+ +K+KV     L + A+G  E+
Sbjct:  116 RMGKQCRERWHNHLNPEVKKSSWTEEEDRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVETGGFLTVKASGQQEE 200          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.408e-16
Identity = 34/69 (49.28%), Postives = 50/69 (72.46%), Query Frame = 2
Query:    8 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKV 214
            R  K CR RW N+L P +K+ ++T++E+++I     +LGNRWA IA  LP RTDN +KN+WN+ +K+KV
Sbjct:  116 RLGKQCRERWHNHLNPEVKKSSWTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYBA_XENLA (Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 2
Query:    8 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRK 220
            R  K CR RW N+L P +K+ ++T++E+++I      +GNRWA IA  LP RTDN IKN+WN+ +K+KV +
Sbjct:  119 RIGKQCRERWHNHLNPDVKKSSWTEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189          
BLAST of CX077960 vs. ExPASy Swiss-Prot
Match: MYBA_MOUSE (Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.605e-15
Identity = 36/84 (42.86%), Postives = 53/84 (63.10%), Query Frame = 2
Query:    8 RCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKVRKLQLAAAGCSEDNS 259
            R  K CR RW N+L P +K+ ++T++E+++I      LGNRWA IA  LP RTDN IKN+WN+ +++KV +      G   + S
Sbjct:  120 RIGKQCRERWHNHLNPEVKKSSWTEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQEGYLQDGIKSERS 203          
The following BLAST results are available for this feature:
BLAST of CX077960 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
MY113_ARATH9.713e-2162.86Transcription factor MYB113 OS=Arabidopsis thalian... [more]
MYB40_ANTMA1.269e-2049.48Myb-related protein 340 OS=Antirrhinum majus GN=MY... [more]
MYBA1_ORYSJ4.820e-2058.90Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]
LAF1_ARATH6.296e-2058.67Transcription factor LAF1 OS=Arabidopsis thaliana ... [more]
MYB05_ANTMA2.392e-1945.63Myb-related protein 305 OS=Antirrhinum majus GN=MY... [more]
MY104_ARATH8.509e-1741.30Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYBB_XENLA5.515e-1644.71Myb-related protein B OS=Xenopus laevis GN=mybl2 P... [more]
MYBB_CHICK9.408e-1649.28Myb-related protein B OS=Gallus gallus GN=MYBL2 PE... [more]
MYBA_XENLA1.605e-1547.89Myb-related protein A OS=Xenopus laevis GN=mybl1 P... [more]
MYBA_MOUSE1.605e-1542.86Myb-related protein A OS=Mus musculus GN=Mybl1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A12-A24-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077960 ID=CX077960; Name=CX077960; organism=Citrus sinensis; type=EST; length=733bp
ATTGCTTAGATGCAGCAAAAGTTGCAGGCTTAGATGGACTAATTACCTAA
GGCCAGGGATCAAGCGTGGGAATTTCACTGATCAAGAAGAGAAGATGATA
ATTCATCTGCAAGCACTTTTGGGCAACAGATGGGCGGCTATTGCTTCTTA
TCTCCCTCAGAGAACTGACAATGACATCAAGAACTATTGGAATACTCACT
TGAAGAAGAAGGTGAGGAAGCTGCAACTAGCTGCTGCTGGCTGCTCTGAA
GATAATAGCCAATATAGAGATGAGCTAGCTTCAGCTTCTTCACAGCAAAT
CTCAAGGGGTCAGTGGGAGAGAAGGCTGCAGACTGATATTCACATGGCTA
AGCAAGCTCTATGTGCGGCCTTGTCACCAGATAAAGCGAGTATTTTGTCT
GAATTGAAGCCTGCTAATGGGTTCATTTCCTACACAAAACCAGCAGTTCA
AGCACCAGCTTACGCTTCAAGCACTGAGAACATTGCTAAGTTGCTCAAAG
GGTGGACCAGAAACGCTCAAAAAAGTGCTTCTTCGAACTCAGGTGTTACT
GATCAGAATTCAATTAATAACAATGTTAATCACATTGCTGGGGCAGAATC
TGCTTCTAGTGAAGAGACTCCAAGCAAAGTTGCAAGCAACAGTACTGGCA
TAGAATTATCAGAGGCTTTTGAATCGTTGTTTGGTTTTGAGTCTTTTGAT
TCGTCAAATTCTACCGATTTATCTCAATCTGTG
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