CX077957

Overview
NameCX077957
Unique NameCX077957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length804
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 66/202 (32.67%), Postives = 103/202 (50.99%), Query Frame = -3
Query:  197 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 802
            +FQ+EYA +AV    T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y E I V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y   AIG GR A     E     +M     ++     +Y    E K  A  LE+  V  E  +
Sbjct:   22 LFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKA-AEGKFDAGTLEVGVVSLEDKK 222          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 62/207 (29.95%), Postives = 108/207 (52.17%), Query Frame = -3
Query:  182 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 802
            ++Q+EYA +AV    T +GIK  DG+V+ V+K ++SK++   S  +I  +  H G+A +GL  D R +V RA+ E       Y E I V+ LA+++  ++   T Y  +RP+G  +++ G      +L+  +PSG    Y    IG GR AA    E+   +++  +  ++   K ++    E K     +EM  + + S  Q +K+
Sbjct:   22 LYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSA-TEGKFDVDTVEMG-IVESSTAQFKKM 226          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 57/183 (31.15%), Postives = 96/183 (52.46%), Query Frame = -3
Query:  254 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 802
            ++Q+EYA +AV      IG++  +G+V+  +K   S +M P S  +IH    H G+A AG  AD RQ++  A+ ++      YGEPI ++ L + V  ++   T     RPFG  +++GG +   P+LY  +PSG  Y +   +IG  R   +  +E+    ++T  +G+    + I    DE
Sbjct:   23 LYQVEYAREAVKRGTASIGVRTPEGVVLAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDE 205          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSJ (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. japonica GN=Os06g0167600 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 63/198 (31.82%), Postives = 108/198 (54.55%), Query Frame = -3
Query:  215 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 802
            ++Q+EYA +A+ N+G+ +G+   DG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+  A  Y   Y EPIPV++L Q +       T +  LRPFG   +  G+D+  G QLYM +PSG    +  AA+G   QAA++ +++     +T  + V    K++    D     A +LE++ V
Sbjct:   18 LYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA4B_ORYSI (Proteasome subunit alpha type-4-2 OS=Oryza sativa subsp. indica GN=OsI_021067 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 63/198 (31.82%), Postives = 108/198 (54.55%), Query Frame = -3
Query:  215 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 802
            ++Q+EYA +A+ N+G+ +G+   DG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+  A  Y   Y EPIPV++L Q +       T +  LRPFG   +  G+D+  G QLYM +PSG    +  AA+G   QAA++ +++     +T  + V    K++    D     A +LE++ V
Sbjct:   18 LYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGLTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 57/162 (35.19%), Postives = 96/162 (59.26%), Query Frame = -3
Query:  311 QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 796
            QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I S+  + G+  +G+  D R +V +++ +A  Y  +Y E IPV +L +  A+ +   T    +RPFG  +++ GYD +GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:   21 QIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 3.180e-23
Identity = 57/162 (35.19%), Postives = 96/162 (59.26%), Query Frame = -3
Query:  311 QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 796
            QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I S+  + G+  +G+  D R +V +++ +A  Y  +Y E IPV +L +  A+ +   T    +RPFG  +++ GYD +GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:   21 QIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 66/201 (32.84%), Postives = 101/201 (50.25%), Query Frame = -3
Query:  194 QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQ 796
            Q+EYA  AV      +GI   +G+V+  E    S +    S  R+  ++ H GM  +G+  D R +V +A+  A  Y   Y EPIPV +L QRVA+ +   T    +RPFG  +++ G+D D P LY  +PSG  + +   A+GK     KT +EK + SE       +  A +      E K  A  +E+  +CD++  Q
Sbjct:   21 QLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQHSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEK-RYSEDLELDDAVHTAILTLKEGFEGKMTADNIEIG-ICDQNGFQ 219          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 5.424e-23
Identity = 63/192 (32.81%), Postives = 108/192 (56.25%), Query Frame = -3
Query:  221 QIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMS 796
            QIE+A +A  + G+ IGIK K+G+V+  EK + S + +  S ++I  +  + G+  AG+  D R ++ +A+ E+  Y   Y E IPV +L + +AS +   T    +RPFG  +++ G+D  GP LY ++PSG  + +   AIGK   ++KT +EK + S+    +  I+ A I      E +   F +E++
Sbjct:   20 QIEHALQAAASGGSAIGIKAKNGVVLITEKKLHSLVDVT-SVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFDEKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEK-RYSDDLEIEDAIQTALITIKEGFETQLTEFNMELA 209          
BLAST of CX077957 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.083e-23
Identity = 56/177 (31.64%), Postives = 96/177 (54.24%), Query Frame = -3
Query:  272 VFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 802
            ++Q++YA +AV    T IGIK K  +V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+L+M EPSG    Y   AIG+G   A   +EK    ++   + ++   K +
Sbjct:   23 LYQVDYAFEAVKKGWTAIGIKSKSSVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLNVEETILLALKAL 199          
The following BLAST results are available for this feature:
BLAST of CX077957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
PSMA_METMA3.180e-2332.67Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METB63.180e-2329.95Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSMA1_HALVO3.180e-2331.15Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA4B_ORYSJ3.180e-2331.82Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA4B_ORYSI3.180e-2331.82Proteasome subunit alpha type-4-2 OS=Oryza sativa ... [more]
PSA2_ORYSJ3.180e-2335.19Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI3.180e-2335.19Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_DROME5.424e-2332.84Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA2_DICDI5.424e-2332.81Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSMA_SULSO7.083e-2331.64Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077957 ID=CX077957; Name=CX077957; organism=Citrus sinensis; type=EST; length=804bp
TCAAGAGAATCCACCAATCTATTAAATATTTTGAAAATGTTTCGAAAAGT
ATTCCAAGACAAGCCCTGAAATGGCATCAAACTAGTAACCAAATATTATC
AACTCTGCTACACTAATCTGCATCCATCTCTTCCAACGCTGCTCTGGCGG
CTGCCTTAGCTTCCTCAAGAAGCTCATCTGGTACCTTCTGATGCTGGCGG
TTTGATTCATCACAGACCCAGCTCATTTCCAGTTCAAAGGCCTTGTCCTT
AGCCTCATCGTGCACTCCATAAATGATCTTGGCTACTTCAATGACCCCTT
GTCGGCAGGTCATTTCAGAAAGCTTCAACTTTTCAATCTCTGTTTTAGCA
GCCTGCCTGCCCTTTCCAATTGCAGCTCCAAAATACCTATAGGAGATACC
AGAAGGTTCAATCATATACAATTGCGGTCCATCTCTGTCATAACCTCCAA
GAATTACACCACATCCAAAAGGTCTGAGCCACCAATATAGAGTACATAGA
TGCACATAGCTAGCAACTCGTTGAGCAAGTTCTTTAACAGGAATTGGTTC
GCCATATACACTTTCATAGTTTGTAGCTTCAGACTTGGCCCTGGTAACAA
TTTGTCTCCCATCTGCTGCTAATCCTGCAACAGCCATGCCGGAGTGACGA
TGAACGGAATGGATTCTTCTATTGGAACCAGGCAACATCATCTTCGACGC
TATTAGCTTCTCCACTCCCATAACGATGCCATCTTTGCATTTAATTCCAA
TCACAGTCCCGCTGTTGTCGACGGCTTTGGCGGCGTATTCGATCTGGAAA
ACGC
back to top