CX077956

Overview
NameCX077956
Unique NameCX077956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13185 contig Csv1_Contig13185:10..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 1.054e-59
Identity = 119/231 (51.52%), Postives = 154/231 (66.67%), Query Frame = 3
Query:   39 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV-CDESNRQHQKV 719
            M+SIGTGYDLS + FSPDGR FQ+EYA KAV+N  T IGIKC DG+V  VEKLI SK+++P  N +I  V RH G   +GL  DGR +V R + EA +++ +Y  PIP+   A R+  YV   TLY  +RPFG   I GG D++G  LYM+EPSG  + Y GAA GKGRQ+AK E+EKL       ++ R+ V + AKIIY  H++ K+K FELE+SW    E+N  H+ V
Sbjct:    1 MTSIGTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFV 231          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.376e-59
Identity = 120/217 (55.30%), Postives = 151/217 (69.59%), Query Frame = 3
Query:   39 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 686
            MS+IGTGYDLS + FSPDGRVFQI+YA+KAV+ SGTVIGI+ KD +V+ VEK+I SK+  P +  RI ++ ++ GMAVAGL ADG  +   A+ EA NY   + + IP+K L  RVA YVH  TLY  +RPFG  +IL  +D  +GPQLY IEPSG S+ YF  A GK +Q AKTE+EKLK+ +M   + V    +IIY VHDE KDK F  EM  V
Sbjct:    1 MSTIGTGYDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKM-DMRTDELVESAGEIIYKVHDELKDKDFRFEMGLV 216          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 1.333e-54
Identity = 110/229 (48.03%), Postives = 159/229 (69.43%), Query Frame = 3
Query:   39 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 722
            MSSIGTGYDL+ +TFSPDGR+FQ+EYA KAVDN+GT+I I+ K+G+V+  +KLI+SK+    +N R+ +V+ + G+AVAG   DG  +   A  EA  +   Y EP+P++ +A  VA Y+H+ TL    RPFG G     +++  G +L+++EPSG++Y Y   A+GK RQAAK EIEKLK+ E+   Q V E A+II  V DE KDK  ++EM WV +++N ++++VP
Sbjct:    1 MSSIGTGYDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTL-GISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGKYEEVP 228          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.254e-36
Identity = 74/205 (36.10%), Postives = 119/205 (58.05%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFEL 671
            GYD ++T FSPDGR+FQ++YA +AV    T +G+KCKDG+V+ VEK + SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++     + T Y  +RPFG  +++ G + + P+L+  +PSG  + +   AIG GR  A    E+    EMT  + +      +  + +E   ++ E+
Sbjct:    9 GYDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEV 212          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.254e-36
Identity = 81/221 (36.65%), Postives = 128/221 (57.92%), Query Frame = 3
Query:   54 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 716
            T YD ++T FSPDGR+FQ+EYA +AV    T +GIK ++G+V+GV+K + SK++ P S  +++ +  H G A AGL AD R +V RA+ EA  Y   YGEPI V  L + +     + T +  +RPFG  +++ G D  G +L+  +PSG    +   AIG+GRQ A    E+    +MT ++ +    + +Y    E +  A  LE++ V  +  R+ ++
Sbjct:    8 TAYDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEASRE-ETTADNLEIAVVDKQGFRKLER 227          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.061e-35
Identity = 82/222 (36.94%), Postives = 128/222 (57.66%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 722
            GYD ++T FSPDGR+FQ+EYA +AV    T +G+K K+GIV+ V+K   SK++ P S  +I  +  H G A +GL AD R I+ +A+ EA      Y EPI V+ LA+++     + T +  +RPFG  +I+GG +  G +L+  +PSG    Y   AIG GR AA  E EK    +M   Q +      +Y    E K     +E++ V + ++++++++P
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDDMNLNQAIELALDAVYEA-TEGKTTPESVEIA-VIEAADKKYRRLP 227          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.173e-34
Identity = 71/184 (38.59%), Postives = 108/184 (58.70%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 608
            GYD ++T FSPDGR+FQ+ YA +AV    T +G+KCKDG+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  +   YGEP P+  + +++     + T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR  A    E     +MT  + +
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAI 191          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.414e-34
Identity = 70/184 (38.04%), Postives = 106/184 (57.61%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 608
            GYD ++T FSPDGR+FQ+ YA +AV    T +G+KC +G+V+ VEK I S+++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP PV  + +++     + T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR  A    E+    +M     +
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCGEGVVLAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGIN-DRPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDDMNLEDAI 191          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 7.605e-34
Identity = 72/172 (41.86%), Postives = 104/172 (60.47%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            GYD ++T FSPDGR+FQ+EYA +AV    T IGIKCK+G+++  +K + SK++   +  +I+ +  H   A +GL AD R ++ RA+ EA      Y EPI VKELA+++  +    T Y  +RPFG  +++ G D + P+LY  +PSG    Y   AIG GR A     EK
Sbjct:    7 GYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVD-EVPKLYETDPSGALLEYKATAIGMGRNAVTEFFEK 177          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.933e-34
Identity = 74/188 (39.36%), Postives = 110/188 (58.51%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVA 620
            GYD ++T FSPDGR+FQ+ YA +AV    T +G+K K+G+V+ VEK I SK++ P S  +I  +  H   A +G+ AD R +V RA+ EA  Y   YGEP+P+  L +++       T Y  +RPFG  +++ G + D P+LY  +PSG  + +   AIG GR  A    E    S+    +G I++A
Sbjct:    9 GYDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFED-HYSDDLDMEGAIKLA 194          
The following BLAST results are available for this feature:
BLAST of CX077956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA3_YEAST1.054e-5951.52Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA3_DROME1.376e-5955.30Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA3_CAEEL1.333e-5448.03Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSMA_THESM1.254e-3636.10Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_METKA1.254e-3636.65Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METTH1.061e-3536.94Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_PYRAB1.173e-3438.59Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_PYRFU3.414e-3438.04Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_ARCFU7.605e-3441.86Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_THEON9.933e-3439.36Proteasome subunit alpha OS=Thermococcus onnurineu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077956 ID=CX077956; Name=CX077956; organism=Citrus sinensis; type=EST; length=860bp
CTTGACTCACAAATCGAAAAAGAAAGAAGAGAGCAAGAATGAGCAGCATA
GGCACAGGCTACGATCTGTCGGTGACCACATTCTCTCCCGACGGTCGCGT
TTTCCAGATCGAATACGCCGCCAAAGCCGTCGACAACAGCGGGACTGTGA
TTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGTGGAGAAGCTAATA
GCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAATCCATTCCGTTCA
TCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCAGATGGGAGACAAA
TTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGAAAGTGTATATGGC
GAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCA
TCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTAATTC
TTGGAGGTTATGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCT
GGTATCTCCTATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGC
TGCTAAAACAGAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGAC
AAGGGGTCATTGAAGTAGCCAAGATCATTTATGGAGTGCACGATGAGGCT
AAGGACAAGGCCTTTGAACTGGAAATGAGCTGGGTCTGTGATGAATCAAA
CCGCCAGCATCAGAAGGTACCAGATGAGCTTCTTGAGGAAGCTAAGGCAG
CCGCCAGAGCAGCGTTGGAAGAGATGGATGCAGATTAGTGTAGCAGAGTT
GATAATATTTGGTTACTAGTTTGATGCCATTTCAGGGCTTGTCTTGGAAT
ACTTTTCGAA
back to top