CX077956

Overview
NameCX077956
Unique NameCX077956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_SULIN (Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 629
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_SULIM (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 629
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_SULIL (Proteasome subunit alpha OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 629
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_SULIK (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 629
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.753e-30
Identity = 68/191 (35.60%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKII 629
            GYD ++T FSPDG ++Q++YA +AV    T IGIK K G+V+  EK  A  ++   S  ++  +  H G + AGLA+DGR ++  A++ A  +  +Y EP+ +  L + VA    + T +  +RPFG  +++ G D+  P+LYM EPSG    Y   AIG+G   A   +EK    ++T    ++   K +
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKKGWTAIGIKSKSGVVIASEKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKEDLTIEDTILLALKAL 199          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.991e-30
Identity = 70/171 (40.94%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD  VTT+SP GR+FQ+EYA +AV      +G++ +   V+      AS+  L    R++  V  H+G+A+AGL ADGR +    +SE  N+  VY  P+PV  LA R+A    +CT   W RP+G G+++ G D  G  LY   PSG  + Y   AIG   QAAKT +E+
Sbjct:    6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASE--LSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLER 174          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.906e-30
Identity = 76/216 (35.19%), Postives = 115/216 (53.24%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNR 704
            GYD ++T FSPDGR+FQ+EYA +AV    T +GIK  DG+V+ V+K I S+++   S  +I  +  H G A +GL AD R +V RA+ EA      Y E I V+ +++++  +    T Y  +RP+G  +++ G D + P+L+  +PSG    Y   AIG GR A     E     +M     ++     +Y    E K  A  LE+  V  E  +
Sbjct:    8 GYDRAITVFSPDGRLFQVEYAREAVKRGTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYREDMNIDAAILLGMDALYKA-AEGKFDAGTLEVGVVSLEDKK 222          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.906e-30
Identity = 72/221 (32.58%), Postives = 120/221 (54.30%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 719
            GYD ++T FSPDGR++Q+EYA +AV    T +GIK  DG+V+ V+K ++SK++   S  +I  +  H G+A +GL  D R +V RA+ E       Y E I V+ LA+++  ++   T Y  +RP+G  +++ G      +L+  +PSG    Y    IG GR AA    E+   +++  +  ++   K ++    E K     +EM  + + S  Q +K+
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKAHDGVVLIVDKRVSSKLLESSSIEKIFKIDEHIGVASSGLVGDARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDGESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLALKDAILLGLKALHSA-TEGKFDVDTVEMG-IVESSTAQFKKM 226          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.906e-30
Identity = 74/204 (36.27%), Postives = 116/204 (56.86%), Query Frame = 3
Query:   63 DLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 647
            D  V TFS +GR+FQ+EYA +A+    TVIGI+ K+G+V+ VEK I+S +ML  S  +I  +  H G AV+GL AD R ++  A+ EA N+  +Y EPI V+ +AQ ++      +L +           RPFG  +++ G D  GP+L+  +PSG+   ++  A G G +AA++ + +     MT R+  I     +  V +E
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISD----LSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE 208          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 5.101e-30
Identity = 69/171 (40.35%), Postives = 96/171 (56.14%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD  VTT+SP GR+FQ+EYA +AV      IG++ +  +V+       S+  L    R+I  V  H G+A+AGL ADGR +    +SE+ N+   Y  P+PV  L   +A    +CT   W RP+G G+++GG D  G  LY   PSG  + Y   AIG   QAAKT +E+
Sbjct:    6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSE--LSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174          
The following BLAST results are available for this feature:
BLAST of CX077956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSMA_SULIN1.753e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIM1.753e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIL1.753e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIK1.753e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSMA_SULIA1.753e-3035.60Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA1_ORYSJ2.991e-3040.94Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSMA_METMA3.906e-3035.19Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_METB63.906e-3032.58Proteasome subunit alpha OS=Methanoregula boonei (... [more]
PSA5_ENTHI3.906e-3036.27Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA1B_ARATH5.101e-3040.35Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077956 ID=CX077956; Name=CX077956; organism=Citrus sinensis; type=EST; length=860bp
CTTGACTCACAAATCGAAAAAGAAAGAAGAGAGCAAGAATGAGCAGCATA
GGCACAGGCTACGATCTGTCGGTGACCACATTCTCTCCCGACGGTCGCGT
TTTCCAGATCGAATACGCCGCCAAAGCCGTCGACAACAGCGGGACTGTGA
TTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGTGGAGAAGCTAATA
GCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAATCCATTCCGTTCA
TCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCAGATGGGAGACAAA
TTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGAAAGTGTATATGGC
GAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCA
TCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTAATTC
TTGGAGGTTATGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCT
GGTATCTCCTATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGC
TGCTAAAACAGAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGAC
AAGGGGTCATTGAAGTAGCCAAGATCATTTATGGAGTGCACGATGAGGCT
AAGGACAAGGCCTTTGAACTGGAAATGAGCTGGGTCTGTGATGAATCAAA
CCGCCAGCATCAGAAGGTACCAGATGAGCTTCTTGAGGAAGCTAAGGCAG
CCGCCAGAGCAGCGTTGGAAGAGATGGATGCAGATTAGTGTAGCAGAGTT
GATAATATTTGGTTACTAGTTTGATGCCATTTCAGGGCTTGTCTTGGAAT
ACTTTTCGAA
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