CX077956

Overview
NameCX077956
Unique NameCX077956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13185 contig Csv1_Contig13185:10..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 5.640e-29
Identity = 69/172 (40.12%), Postives = 97/172 (56.40%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            GY  S+TTFSP G++ QIEYA  AV      +GIK  +G+V+  EK   S +    S  +I  + +H GM  +G+  D R +V RA+  A  Y  VY EPIP  +L QRVAS +   T    +RPFG  +++ G+D D P L+  +PSG  + +   A+GK     KT +EK
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAVAAGAPSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEK 176          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2A_ARATH (Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.640e-29
Identity = 69/205 (33.66%), Postives = 114/205 (55.61%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV-IEVAKIIYGVHDEAKDKAFEL 671
            Y  S+TTFSP G++ QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I  +  + G+  +G+  D R +V +++ +A  Y  +Y EPIPV +L +  A+ +   T    +RPFG  +++ GYD  GPQLY ++PSG  + +  +A+GK    AKT +EK    +M     +   +  +  G   E   K  E+
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEI 210          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA4_ARATH (Proteasome subunit alpha type-4 OS=Arabidopsis thaliana GN=PAC1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.366e-29
Identity = 72/211 (34.12%), Postives = 120/211 (56.87%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 686
            YD   T FSP+GR++Q+EYA +A+ N+G+ IGI  KDG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y  +Y EP+PV++L Q +       T +  LRPFG   +  G+D+  G QLYM +PSG    +  AA+G   QAA++ +++    + T  + V    K++    D     + +LE++ V
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKDDATREEAVELALKVLTKTMDSTSLTSEKLELAEV 215          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.366e-29
Identity = 67/172 (38.95%), Postives = 101/172 (58.72%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEA-TNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            Y  S+TTFSP+G++ QIEYA  AV+   T +GIK  DG+V+  EK   S++ +  S  ++ ++    GM  +G+  D R +V +++  A T Y+ +Y E  P K L Q +AS +   T    +RPFG  +++ G D  GP LY ++PSG  + +   AIGK   AAKT +EK
Sbjct:    5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEK 176          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_NATPD (Proteasome subunit alpha OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=psmA PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.621e-29
Identity = 69/197 (35.03%), Postives = 108/197 (54.82%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 650
            YD  +T FSPDGR++Q+EYA +AV      IGI+ +DG+V+ V+K I S +M   S  +IH    H G+A AG  AD RQ++  A+ +A   +  Y EPI V+ L + V  ++   T     RPFG  +I+GG +   P+LY  +PSG  Y +   A+G  R   +  +E+     +    G+    + +  V+D++
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGIRTEDGVVLVVDKRIRSPLMERTSVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYDEPIGVETLTKAVTDHIQQYTQVGGARPFGVALIIGGIEDGEPRLYETDPSGTPYEWQALAVGADRGDIQEYLEEHYSESLDTEAGIGLALEALASVNDDS 206          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 9.621e-29
Identity = 69/205 (33.66%), Postives = 113/205 (55.12%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV-IEVAKIIYGVHDEAKDKAFEL 671
            Y  S+TTFSP G++ QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I  +  + G   +G+  D R +V +++ +A  Y  +Y EPIPV +L +  A+ +   T    +RPFG  +++ GYD  GPQLY ++PSG  + +  +A+GK    AKT +EK    +M     +   +  +  G   E   K  E+
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEGEISSKNIEI 210          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSJ (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. japonica GN=PAC1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-28
Identity = 72/211 (34.12%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 686
            YD   T FSP+GR++Q+EYA +A+ N+G+ +G+   DG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+  A  Y   Y EPIPV++L Q +       T +  LRPFG   +  G+D+  G QLYM +PSG    +  AA+G   QAA++ +++     MT  + V    K++    D     A +LE++ V
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA4A_ORYSI (Proteasome subunit alpha type-4-1 OS=Oryza sativa subsp. indica GN=OsI_021120 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-28
Identity = 72/211 (34.12%), Postives = 117/211 (55.45%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 686
            YD   T FSP+GR++Q+EYA +A+ N+G+ +G+   DG+V+  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+  A  Y   Y EPIPV++L Q +       T +  LRPFG   +  G+D+  G QLYM +PSG    +  AA+G   QAA++ +++     MT  + V    K++    D     A +LE++ V
Sbjct:    5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSALGVLAADGVVLVGEKKVTSKLLQTSRSAEKMYKIDSHLACAVAGIMSDANILLNTARLHAQRYALSYQEPIPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGFQLYMSDPSGNYSGWKAAAVGANSQAAQSMLKQDYRDGMTREEAVALALKVLSKTMDSTSLTAEKLELAEV 215          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSJ (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica GN=PAB1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-28
Identity = 65/177 (36.72%), Postives = 107/177 (60.45%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 590
            Y  S+TTFSP G++ QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I S+  + G+  +G+  D R +V +++ +A  Y  +Y E IPV +L +  A+ +   T    +RPFG  +++ GYD +GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2_ORYSI (Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica GN=PAB1 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.257e-28
Identity = 65/177 (36.72%), Postives = 107/177 (60.45%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM 590
            Y  S+TTFSP G++ QIE+A  AV +  T +GIK  +G+V+  EK + S ++   S ++I S+  + G+  +G+  D R +V +++ +A  Y  +Y E IPV +L +  A+ +   T    +RPFG  +++ GYD +GPQLY ++PSG  + +  +A+GK    AKT +EK    +M
Sbjct:    6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDM 182          
The following BLAST results are available for this feature:
BLAST of CX077956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_CARAU5.640e-2940.12Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA2A_ARATH5.640e-2933.66Proteasome subunit alpha type-2-A OS=Arabidopsis t... [more]
PSA4_ARATH7.366e-2934.12Proteasome subunit alpha type-4 OS=Arabidopsis tha... [more]
PSA2_SCHPO7.366e-2938.95Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSMA_NATPD9.621e-2935.03Proteasome subunit alpha OS=Natronomonas pharaonis... [more]
PSA2B_ARATH9.621e-2933.66Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]
PSA4A_ORYSJ1.257e-2834.12Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA4A_ORYSI1.257e-2834.12Proteasome subunit alpha type-4-1 OS=Oryza sativa ... [more]
PSA2_ORYSJ1.257e-2836.72Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]
PSA2_ORYSI1.257e-2836.72Proteasome subunit alpha type-2 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077956 ID=CX077956; Name=CX077956; organism=Citrus sinensis; type=EST; length=860bp
CTTGACTCACAAATCGAAAAAGAAAGAAGAGAGCAAGAATGAGCAGCATA
GGCACAGGCTACGATCTGTCGGTGACCACATTCTCTCCCGACGGTCGCGT
TTTCCAGATCGAATACGCCGCCAAAGCCGTCGACAACAGCGGGACTGTGA
TTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGTGGAGAAGCTAATA
GCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAATCCATTCCGTTCA
TCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCAGATGGGAGACAAA
TTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGAAAGTGTATATGGC
GAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCA
TCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTAATTC
TTGGAGGTTATGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCT
GGTATCTCCTATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGC
TGCTAAAACAGAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGAC
AAGGGGTCATTGAAGTAGCCAAGATCATTTATGGAGTGCACGATGAGGCT
AAGGACAAGGCCTTTGAACTGGAAATGAGCTGGGTCTGTGATGAATCAAA
CCGCCAGCATCAGAAGGTACCAGATGAGCTTCTTGAGGAAGCTAAGGCAG
CCGCCAGAGCAGCGTTGGAAGAGATGGATGCAGATTAGTGTAGCAGAGTT
GATAATATTTGGTTACTAGTTTGATGCCATTTCAGGGCTTGTCTTGGAAT
ACTTTTCGAA
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