CX077956

Overview
NameCX077956
Unique NameCX077956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 121.709 bits (304), Expect = 5.279e-27
Identity = 65/172 (37.79%), Postives = 96/172 (55.81%), Query Frame = 3
Query:   57 GYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            GY  S+TTFSP G++ QIEYA  AV      +GIK  +G+V+  EK   S +    S  ++  + +H G+  +G+  D R +V RA+  A  Y  VY EPIP  +L QRVAS +   T    +RPFG  +++ G++   P L+  +PSG  + +   A+GK     KT +EK
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEK 176          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA2_HALMA (Proteasome subunit alpha 2 OS=Haloarcula marismortui GN=psmA2 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.895e-27
Identity = 61/199 (30.65%), Postives = 106/199 (53.27%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 656
            YD  +T FSPDGR++Q+EYA +AV      +G++ +DG+V+  ++   S ++   S  +IH +  H G+A AG  AD RQ++  A+ ++      Y EP  V+ L + +  Y+   T     RPFG  +++ G +   P+L+  +PSG  Y +   AIG  R+  +T +E+     M    G+    + +  V+++  D
Sbjct:    9 YDRGITIFSPDGRLYQVEYAREAVKRGTASVGVRTEDGVVIAADRHARSPLIERDSIEKIHEIDSHVGVASAGHVADARQLIDVARRQSQVNRLRYDEPASVESLTKEITDYIQQYTQTGGARPFGVALLVAGIEDGEPRLFETDPSGTPYEWQAVAIGGSREDIQTFLEEEYAEGMDLEGGIELALRALASVNEDGLD 207          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 9.005e-27
Identity = 60/171 (35.09%), Postives = 98/171 (57.31%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDGR+FQ+EYA +AV    T +G+K  +G+++  +K I SK++   S  +I  +  +     +GL AD R ++  A+  A   +  YG  + ++ L +RVA  +   T Y  +RP+G  +I  G D+ GP+L+  +P+G    Y   AIG G+ A  + +EK
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEK 178          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.005e-27
Identity = 63/172 (36.63%), Postives = 101/172 (58.72%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDG +FQ+EYA +AV    T +GI+ KD +V+GVEK   +K+    + R+I ++  H  MA AGL AD R ++ RA+ E  ++     +P+ V+ + + +A+     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+  +  +  +EK
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGIRGKDIVVLGVEKKSVAKLQEERTVRKICALDEHVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEK 176          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.176e-26
Identity = 63/172 (36.63%), Postives = 103/172 (59.88%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDG +FQ+EYA +AV    T +G++ KD +V+GVEK   +K+    + R+I ++  +  MA AGL AD R ++ RA+ E  ++     +P+ V+ + + +AS     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+G ++ +  +EK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.176e-26
Identity = 63/172 (36.63%), Postives = 103/172 (59.88%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDG +FQ+EYA +AV    T +G++ KD +V+GVEK   +K+    + R+I ++  +  MA AGL AD R ++ RA+ E  ++     +P+ V+ + + +AS     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+G ++ +  +EK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.536e-26
Identity = 69/214 (32.24%), Postives = 114/214 (53.27%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV-----HLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWV 686
            YD  V TFSP+GR+FQ+EYA +      T IGI+  +G+ + VEK I S +M P S  +I  +  H G A++GL AD + ++ +A+ E  N+   Y E + V+ + Q V++                RPFG  ++ GG D  GPQL+ ++PSG   +    AIG   + A++ ++++     T ++ +     I+  V +E K  A  +E++ V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 65/196 (33.16%), Postives = 104/196 (53.06%), Query Frame = 3
Query:   54 TGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGV 638
            T YD + T FSP+G ++Q+ YA +AV    T +GIK  +G+V+  EK     ++      +I+ +  H G+A AG+  DGR ++  A+     +  +YGEP PV+ +A+ VA      T +  +RPFG  +I  G + DG  ++Y  +P G  + +   AIG G Q A    EK   S+M+  +      KI+Y +
Sbjct:   10 TAYDRAATIFSPEGDLYQVRYAFEAVKKGWTSLGIKTNEGVVIAAEKRFIGPLVDIDDIDKIYKIDDHIGVAFAGMGGDGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSDMSLEEATKLALKILYAI 205          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA7B_XENLA (Proteasome subunit alpha type-7-B OS=Xenopus laevis GN=psma7-B PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 62/172 (36.05%), Postives = 103/172 (59.88%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDG +FQ+EYA +AV    T +G++ K+ +V+GVEK   +K+    + R+I ++  +  MA AGL AD R ++ RA+ E  ++     +P+ V+ + + +AS     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+G ++ +  +EK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174          
BLAST of CX077956 vs. ExPASy Swiss-Prot
Match: PSA7A_XENLA (Proteasome subunit alpha type-7-A OS=Xenopus laevis GN=psma7-A PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.006e-26
Identity = 62/172 (36.05%), Postives = 103/172 (59.88%), Query Frame = 3
Query:   60 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVMGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 572
            YD ++T FSPDG +FQ+EYA +AV    T +G++ K+ +V+GVEK   +K+    + R+I ++  +  MA AGL AD R ++ RA+ E  ++     +P+ V+ + + +AS     T     RPFG   ++ G+D DG P+LY  +PSG  + +   AIG+G ++ +  +EK
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKEIVVLGVEKKSVAKLQDERTVRKICALDENVFMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEK 174          
The following BLAST results are available for this feature:
BLAST of CX077956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 176
Match NameE-valueIdentityDescription
PSA2_BOVIN5.279e-2737.79Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSMA2_HALMA6.895e-2730.65Proteasome subunit alpha 2 OS=Haloarcula marismort... [more]
PSMA_THEVO9.005e-2735.09Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSA7_CARAU9.005e-2736.63Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSA7_MOUSE1.176e-2636.63Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA7_BOVIN1.176e-2636.63Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSA5_RAT1.536e-2632.24Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSMA_AERPE2.006e-2633.16Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA7B_XENLA2.006e-2636.05Proteasome subunit alpha type-7-B OS=Xenopus laevi... [more]
PSA7A_XENLA2.006e-2636.05Proteasome subunit alpha type-7-A OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A09-A18-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077956 ID=CX077956; Name=CX077956; organism=Citrus sinensis; type=EST; length=860bp
CTTGACTCACAAATCGAAAAAGAAAGAAGAGAGCAAGAATGAGCAGCATA
GGCACAGGCTACGATCTGTCGGTGACCACATTCTCTCCCGACGGTCGCGT
TTTCCAGATCGAATACGCCGCCAAAGCCGTCGACAACAGCGGGACTGTGA
TTGGAATTAAATGCAAAGATGGCATCGTTATGGGAGTGGAGAAGCTAATA
GCGTCGAAGATGATGTTGCCTGGTTCCAATAGAAGAATCCATTCCGTTCA
TCGTCACTCCGGCATGGCTGTTGCAGGATTAGCAGCAGATGGGAGACAAA
TTGTTACCAGGGCCAAGTCTGAAGCTACAAACTATGAAAGTGTATATGGC
GAACCAATTCCTGTTAAAGAACTTGCTCAACGAGTTGCTAGCTATGTGCA
TCTATGTACTCTATATTGGTGGCTCAGACCTTTTGGATGTGGTGTAATTC
TTGGAGGTTATGACAGAGATGGACCGCAATTGTATATGATTGAACCTTCT
GGTATCTCCTATAGGTATTTTGGAGCTGCAATTGGAAAGGGCAGGCAGGC
TGCTAAAACAGAGATTGAAAAGTTGAAGCTTTCTGAAATGACCTGCCGAC
AAGGGGTCATTGAAGTAGCCAAGATCATTTATGGAGTGCACGATGAGGCT
AAGGACAAGGCCTTTGAACTGGAAATGAGCTGGGTCTGTGATGAATCAAA
CCGCCAGCATCAGAAGGTACCAGATGAGCTTCTTGAGGAAGCTAAGGCAG
CCGCCAGAGCAGCGTTGGAAGAGATGGATGCAGATTAGTGTAGCAGAGTT
GATAATATTTGGTTACTAGTTTGATGCCATTTCAGGGCTTGTCTTGGAAT
ACTTTTCGAA
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