CX077949

Overview
NameCX077949
Unique NameCX077949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA2_CHICK (Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.934e-93
Identity = 159/240 (66.25%), Postives = 193/240 (80.42%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRECIS+HIGQAG+Q+GNACWEL+CLEH IQPDG      +    DD+F TFF ET   K+VPRA+ VDLEPTV+DEVRTGTYR LFHPEQLI+GKEDAANN+ARGHYT+GK+ VD+  DRIRKLAD+C+GLQGFL+F++                  V+YGKKSKL F +YP+PQ S++VVEPYNSVL+TH+ LEH+D   ++DNEAIYDIC R+LDIERPTYTNLNRL+SQ++SS+TA
Sbjct:    1 MRECISVHIGQAGVQIGNACWELFCLEHSIQPDGTFSDPPS---SDDSFATFFRETSMSKYVPRAIMVDLEPTVVDEVRTGTYRHLFHPEQLITGKEDAANNYARGHYTVGKDKVDMVSDRIRKLADSCSGLQGFLIFHSFGGGTGSGFTSLLMERLSVEYGKKSKLEFAIYPAPQASSAVVEPYNSVLTTHTTLEHSDCVFMVDNEAIYDICHRNLDIERPTYTNLNRLISQIVSSITA 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_MYCGR (Tubulin alpha chain OS=Mycosphaerella graminicola PE=3 SV=1)

HSP 1 Score: 335.88 bits (860), Expect = 1.610e-91
Identity = 152/240 (63.33%), Postives = 192/240 (80.00%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     DD F+TFFSETG GK+VPR ++ DLEP V+DEVRTGTYR LFHPE +I+GKEDA+NN+ARGHYT+GKE++D  LD++R +ADNC+GLQGFLVF++                  VDYGKK KL F VYP+PQV+TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP Y NLNRL++QV+SS+TA
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAAEDDDGFSTFFSETGNGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPELMITGKEDASNNYARGHYTVGKELIDQVLDKVRHVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKCKLEFCVYPAPQVATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPNYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_GIBZE (Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=3 SV=2)

HSP 1 Score: 335.88 bits (860), Expect = 1.610e-91
Identity = 153/240 (63.75%), Postives = 191/240 (79.58%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE ISI++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GKHVPRA++ DLEP V+DEVRTG YR LFHPE +I+GKEDA+NN+ARGHYT+GKE++D  LD+IR++ADNC GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TA
Sbjct:    1 MREVISINVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAQDPDQGFSTFFSETGNGKHVPRAIYCDLEPNVVDEVRTGAYRNLFHPEMMITGKEDASNNYARGHYTVGKELIDGVLDKIRRVADNCAGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA2_NEUCR (Tubulin alpha-B chain OS=Neurospora crassa GN=tba-2 PE=2 SV=2)

HSP 1 Score: 333.183 bits (853), Expect = 1.043e-90
Identity = 151/240 (62.92%), Postives = 190/240 (79.17%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTG YR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TA
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYNSILTTHTTLEHADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA2_SCHPO (Tubulin alpha-2 chain OS=Schizosaccharomyces pombe GN=tub1 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.780e-90
Identity = 155/240 (64.58%), Postives = 192/240 (80.00%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE ISIH+GQAG Q+GNACWELYCLEHGIQP+G M  +      D  F+TFFSETG GK+VPR+++VDLEP VID+VRTG YR LFHPEQLI+GKEDA+NN+ARGHYT+GKE+VD   D+IR++ADNC+GLQGFLVF++                  ++Y KKSKL F+VYP+PQVSTSVVEPYNSVL+TH+ L+  D   ++DNE+ YDICRR+LDIERP+Y NLNRL++QV+SS+TA
Sbjct:    1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 1.780e-90
Identity = 151/240 (62.92%), Postives = 193/240 (80.42%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP V+DEVRTGTYR LFHPE LI+GKEDA+NN+ARGHYT+GKE++D  LD++R++AD+C+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+D + ++DNEAIYDICRR+L IERP+Y NLNRL++QV+SS+TA
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGHYTVGKEMIDQVLDKVRRMADSCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLGIERPSYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 329.331 bits (843), Expect = 1.507e-89
Identity = 153/244 (62.70%), Postives = 194/244 (79.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD----DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+H+GQAG+Q+GNACWELYCLEHGI PDG    +  V   +    D F TFFSETG GK VPR+++VDLEP VID+VRTG Y+ LFHPEQ+++GKEDA+NN+ARGHYT+GKE++D  L+RIR++ADNC+GLQGFLVF++                  ++YGKKS L F+VYP+PQVSTSVVEPYNSVL+TH+ L+++D   ++DNEA YDICRR+LDIERPTY NLNRL++QV+SS+TA
Sbjct:    1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGFPTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITA 244          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.357e-89
Identity = 149/240 (62.08%), Postives = 190/240 (79.17%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE +S+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  FNTFFSETG GK+VPR ++ DLEP V+DEVRTG YR LFHPEQ+I+GKEDA+NN+ARGHYT+GKE++D CLD++R++ADNC+GLQGFLVF++                  VDYGKK+KL F VYP+PQ +TSVVEPYNS+L+TH+ LEH+DV  ++DNEAIYDICRR+L IERP+Y N NRL++Q  S +TA
Sbjct:    1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGHYTVGKEMIDQCLDKVRRVADNCSGLQGFLVFHSFGGGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQFMVDNEAIYDICRRNLGIERPSYENSNRLMAQGQSPITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_SORMA (Tubulin alpha chain OS=Sordaria macrospora GN=TUBA PE=3 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.410e-87
Identity = 147/240 (61.25%), Postives = 188/240 (78.33%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+++GQAG Q+ N+CWELYCLEHGIQPDG +  ++     D  F+TFFSETG GK+VPR ++ DLEP VIDEVRTG YR LFHPE +ISGKEDA+NN+ARGHYT+GKE++D  LD++R++ADNC+GLQGFLVF++                  VDYGKKSKL F VYP+PQ +TSVVEPY++ L+T++ LE  D + ++DNEAIYDICRR+L +ERP Y NLNRL++QV+SS+TA
Sbjct:    1 MREIISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKAADPDHGFSTFFSETGNGKYVPRTIYADLEPNVIDEVRTGAYRGLFHPEHMISGKEDASNNYARGHYTVGKELIDQVLDKVRRVADNCSGLQGFLVFHSFGGGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQTATSVVEPYHNFLTTNTTLEQADCSFMVDNEAIYDICRRNLGLERPNYENLNRLIAQVVSSITA 240          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_ASHGO (Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=3 SV=1)

HSP 1 Score: 320.472 bits (820), Expect = 6.999e-87
Identity = 152/242 (62.81%), Postives = 193/242 (79.75%), Query Frame = 3
Query:   87 MRECISIH-IGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVG-GGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS++ +GQAG Q+GNACWELY LEHGI+PDG +    T   GG++ F+TFF+ETG+GK VPRAV+VDLEP VIDEVRTG YR+LFHPEQLISGKEDAANN+ARGHYT+G+E++D  LDRIRK++D C GLQGFL  +++                 +DYGKKSKL F VYP+PQVSTSVVEPYN+VL+TH+ LEH D   ++DNEAIY++C+++LDI RP++ NLN L++QV+SS+TA
Sbjct:    1 MREVISVNAVGQAGCQIGNACWELYSLEHGIRPDGYLQEGLTKPKGGEEGFSTFFNETGSGKFVPRAVYVDLEPNVIDEVRTGAYRELFHPEQLISGKEDAANNYARGHYTVGRELLDDILDRIRKISDQCDGLQGFLFTHSLGGGTGSGLGSLLLEQLSIDYGKKSKLEFAVYPAPQVSTSVVEPYNTVLTTHTTLEHADCTFMVDNEAIYEMCKKNLDISRPSFANLNNLIAQVVSSVTA 242          
The following BLAST results are available for this feature:
BLAST of CX077949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBA2_CHICK2.934e-9366.25Tubulin alpha-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBA_MYCGR1.610e-9163.33Tubulin alpha chain OS=Mycosphaerella graminicola ... [more]
TBA_GIBZE1.610e-9163.75Tubulin alpha chain OS=Gibberella zeae GN=TUB1 PE=... [more]
TBA2_NEUCR1.043e-9062.92Tubulin alpha-B chain OS=Neurospora crassa GN=tba-... [more]
TBA2_SCHPO1.780e-9064.58Tubulin alpha-2 chain OS=Schizosaccharomyces pombe... [more]
TBA1_EMENI1.780e-9062.92Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA1_SCHPO1.507e-8962.70Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBA_AJECA3.357e-8962.08Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA_SORMA1.410e-8761.25Tubulin alpha chain OS=Sordaria macrospora GN=TUBA... [more]
TBA_ASHGO6.999e-8762.81Tubulin alpha chain OS=Ashbya gossypii GN=TUB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A05-A10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077949 ID=CX077949; Name=CX077949; organism=Citrus sinensis; type=EST; length=807bp
CGTCTTAATAAACGCCTTCGTTTAGATTCAATTACTTCTTCTTTTGGCTG
TGTACGTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAGTGCAT
TTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGG
AACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGT
GATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGA
AACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGC
CCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCAC
CCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCG
TGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCA
TCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTC
AATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGA
GAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCT
ACCCATCTCCTCAGGTCTCCACATCTGTTGTTGAGCCTTACAACAGTGTC
CTCTCAACCCACTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGA
CAATGAGGCCATTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTC
CTACCTATACTAACCTCAATAGACTTGTTTCTCAGGTAATTTCTTCATTG
ACTGCCT
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