CX077949

Overview
NameCX077949
Unique NameCX077949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 9.789e-81
Identity = 145/239 (60.67%), Postives = 187/239 (78.24%), Query Frame = 3
Query:   93 ECISIHIGQAGIQVGNACWELYCLEHGIQPDGQM-PSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            E + +H+GQAG Q+GN+ WELY LEHG+  DG+  PS K V  G  ++ TFF+ET  GK+VPR++FVDL+P+ IDE+RTG YRQLFHPE LISGKEDAANN+ARGHYTIGKE+VD  +DRIR++ADNC  LQGFL+F++                   +YGKKSKL F VYP+P+VST+VVEPYN+VLSTHS +E++D   L+DNEA+YDICRR+LDI RP+Y +LNRL++QV+SS+T+
Sbjct:    4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGG-SYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGHYTIGKEMVDNVIDRIRRVADNCHSLQGFLIFHSFGGGTGSGFGALLLERLSTEYGKKSKLEFAVYPAPRVSTAVVEPYNAVLSTHSTIENSDCTFLVDNEAVYDICRRNLDIPRPSYDHLNRLIAQVVSSITS 241          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBAL3_MOUSE (Tubulin alpha chain-like 3 OS=Mus musculus GN=Tubal3 PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 4.858e-80
Identity = 139/247 (56.28%), Postives = 186/247 (75.30%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDK-------TVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MREC+SIHIGQAG+Q+G+ACWELYCLEHGIQPDG +   +        V   + + +TFF ET AGKHVPR +F+DLEPTVID +R G Y  LFHPEQL++GKEDAAN +ARG Y++G E+++L L+RIRKLA+ C+GLQGFL++ +                  V+Y KK KL F+VYPSP++ST+VVEPYN++L+THS +E++D A ++DNEA+YDIC+  L I RP+Y ++NRL++QV SS+TA
Sbjct:    1 MRECLSIHIGQAGVQIGDACWELYCLEHGIQPDGFILDHQHDNLENPKVEHMNASLDTFFHETRAGKHVPRTLFMDLEPTVIDGIRVGRYHSLFHPEQLVNGKEDAANTYARGRYSVGSEVIELVLERIRKLAEQCSGLQGFLIYRSFGGGTGSGFTSLLMERLSVEYCKKIKLEFSVYPSPRISTAVVEPYNAILTTHSTIEYSDCAFMVDNEALYDICQHKLGIGRPSYASINRLIAQVSSSITA 247          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_ENCCU (Tubulin alpha chain OS=Encephalitozoon cuniculi GN=TUB1 PE=3 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 7.015e-79
Identity = 133/240 (55.42%), Postives = 189/240 (78.75%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE IS+HIGQAG+Q+GNACWELYC EHGI P+GQ+  +K     D++  +FFS T  G +VPR + VDLEP V+D ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++  +++IR++AD+C GLQGFL++++                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ L+++D + L+DNEAIYD+C R+L I+RP YT++NR+++QV+SS+TA
Sbjct:    1 MREIISLHIGQAGVQIGNACWELYCKEHGILPNGQLDQNKM---DDESAESFFSPTSVGTYVPRTLMVDLEPGVLDSIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPAMEQIRRMADSCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMC-RNLGIQRPYYTDINRVIAQVVSSITA 236          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 4.547e-78
Identity = 140/251 (55.78%), Postives = 181/251 (72.11%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVG--------GGDDAFN---TFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE +SI IGQ GIQ+GNACWELY LEHGI  DG + + + +         G D + N   TFF+ETG GK VPR++FVDLEPTVID+VR G  R+L+HPEQLISGKEDAANN+ARG Y+IGKE++D    R++K+A+ C  LQGFL+F+++                  DY KK KL F VYPSP+VST+VVEPYN++L+THS ++H+D   ++DNEAIYDIC  SL ++RP Y NLNRL++Q++SS TA
Sbjct:    1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARGRYSIGKEVIDRVTSRLQKIAEQCDSLQGFLIFHSLGGGTGSGFTSLLVERLSTDYSKKCKLDFAVYPSPKVSTAVVEPYNALLTTHSTMDHSDCVFMVDNEAIYDICNNSLGVDRPAYRNLNRLIAQIVSSTTA 251          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 1.910e-76
Identity = 135/239 (56.49%), Postives = 175/239 (73.22%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE I+IHIGQAGIQ G   W L C EHGI  DG   S    G  D   +  FSE   GK+VPR + VDLEP+V+D VR  +Y++L+HP Q+I+G+EDAANNFARGHYT+GK+++D+ +DR+RK+ADNCT LQGF +F++V                 V++ KK KL +TVYPSPQ++TSVVEPYNSVLSTHSLLEH D++V+LDN+AIYDIC++ L IER  Y NLN ++SQ +S++T
Sbjct:    1 MREIINIHIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANGNSD--CSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGHYTVGKDMLDVTVDRLRKIADNCTSLQGFQIFHSVGGGTGSGFASLLVERLSVEFPKKCKLSYTVYPSPQLATSVVEPYNSVLSTHSLLEHNDISVVLDNQAIYDICKQRLKIERANYRNLNHVISQTVSAIT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA2_ANEPH (Tubulin alpha-2 chain (Fragment) OS=Anemia phyllitidis GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.595e-69
Identity = 131/155 (84.52%), Postives = 137/155 (88.39%), Query Frame = 3
Query:  342 LFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRS-LDIERPTYTNLNRLVSQVISSLT 803
            LFHPEQLISGKEDAANNFARGHYT+GKEIVDLCLDR+RKL+DNCTGLQGFLVFNAV                 VDYGKKSKLGFT+YPSPQVST+VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRS LDIERPTYTNLNRLVSQ+ISSLT
Sbjct:    1 LFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLSDNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLLDIERPTYTNLNRLVSQIISSLT 155          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.792e-66
Identity = 114/218 (52.29%), Postives = 169/218 (77.52%), Query Frame = 3
Query:  153 LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            LYC EHGI PDG++  ++     D++  +FFS+T  G +VPR + VDLEP V++ ++TG YR+L+HP QLISGKEDAANN+ARGHYT+GKEI++  +++IR++ADNC GLQGFL++++                   ++GKKSKL F+VYP+P+++T+VVEPYNS+L+TH+ L+++D + L+DNEAIYD+C R+L I+RP YT++NR+++QV+SS+TA
Sbjct:    1 LYCKEHGILPDGRLDQNRM---DDESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGHYTVGKEIIEPVMEQIRRMADNCDGLQGFLIYHSFGGGTGSGFASLMMDRLAAEFGKKSKLEFSVYPAPKIATAVVEPYNSILTTHTTLDYSDCSFLVDNEAIYDMC-RNLGIQRPYYTDINRIIAQVVSSITA 214          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.057e-66
Identity = 121/246 (49.19%), Postives = 171/246 (69.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKT------VGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            MRE I+I+IGQAG Q+GN CWEL+CLEHGIQPDG   ++         GG D A+N FF E   G+HVPRA+FVD EPTVIDE++TG Y  L+HPE LI GKEDA++NFA+G  T  + +++  +D IRK  +NCTGLQGF ++N+V                   Y KK+KL   ++PSP++S+ VVEPYN+VL+TH++++  +   ++DNE+IY IC++ L +  P+Y +LN+L++Q +SS+TA
Sbjct:    1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKGK-TGYEPLLNQTMDAIRKATENCTGLQGFFIYNSVGGGTGSGFTAALCEKLADKYTKKTKLNTVIWPSPKLSSGVVEPYNAVLNTHAMMKFVNCTFMVDNESIYKICQKQLGVHSPSYFHLNQLIAQAMSSITA 245          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA4B_HUMAN (Putative tubulin-like protein alpha-4B OS=Homo sapiens GN=TUBA4B PE=5 SV=2)

HSP 1 Score: 232.646 bits (592), Expect = 1.919e-60
Identity = 108/160 (67.50%), Postives = 134/160 (83.75%), Query Frame = 3
Query:  327 GTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA 806
            GTYRQ+FHPEQLI+GKEDAANN+A GHYTIGKE +DL LDRIRKLAD CTGLQGFLVF+++                 V+YGKKSKLGF++YP+PQVST++V+PYNS+L+TH+ LEH+D A ++DN+AIYDIC  +LDIERPTYTNLNRL+SQ++SS+TA
Sbjct:   20 GTYRQIFHPEQLITGKEDAANNYAWGHYTIGKEFIDLLLDRIRKLADQCTGLQGFLVFHSLGRGTGSDVTSFLMEWLSVNYGKKSKLGFSIYPAPQVSTAMVQPYNSILTTHTTLEHSDCAFMVDNKAIYDICHCNLDIERPTYTNLNRLISQIVSSITA 179          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.064e-58
Identity = 105/113 (92.92%), Postives = 108/113 (95.58%), Query Frame = 3
Query:  144 CWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGL 482
            CWELY LEHGIQPDG MPSD TVG GDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTG YRQLFHPEQLISGKEDAANNFARGHYT+G+EIVDLCLDR+RKLADNCTGL
Sbjct:    1 CWELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTVGEEIVDLCLDRVRKLADNCTGL 113          
The following BLAST results are available for this feature:
BLAST of CX077949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBA_GLOLA9.789e-8160.67Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBAL3_MOUSE4.858e-8056.28Tubulin alpha chain-like 3 OS=Mus musculus GN=Tuba... [more]
TBA_ENCCU7.015e-7955.42Tubulin alpha chain OS=Encephalitozoon cuniculi GN... [more]
TBA4_DROME4.547e-7855.78Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBA6_NAEGR1.910e-7656.49Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA2_ANEPH8.595e-6984.52Tubulin alpha-2 chain (Fragment) OS=Anemia phyllit... [more]
TBA_ENCHE1.792e-6652.29Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBA1_ENTHI3.057e-6649.19Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA4B_HUMAN1.919e-6067.50Putative tubulin-like protein alpha-4B OS=Homo sap... [more]
TBA_PICAB3.064e-5892.92Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A05-A10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077949 ID=CX077949; Name=CX077949; organism=Citrus sinensis; type=EST; length=807bp
CGTCTTAATAAACGCCTTCGTTTAGATTCAATTACTTCTTCTTTTGGCTG
TGTACGTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAGTGCAT
TTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGG
AACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGT
GATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGA
AACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGC
CCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCAC
CCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCG
TGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCA
TCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTC
AATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGA
GAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCT
ACCCATCTCCTCAGGTCTCCACATCTGTTGTTGAGCCTTACAACAGTGTC
CTCTCAACCCACTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGA
CAATGAGGCCATTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTC
CTACCTATACTAACCTCAATAGACTTGTTTCTCAGGTAATTTCTTCATTG
ACTGCCT
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