CX077949

Overview
NameCX077949
Unique NameCX077949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB2_SOYBN (Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.286e-52
Identity = 101/239 (42.26%), Postives = 148/239 (61.92%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + I  GQ G Q+G   WE+ C EHGI P G+   D  +    +  N +++E   G+ V RAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D +++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T
Sbjct:    1 MRESLHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYGGDSELQL--ERINVYYNEASCGRFVRRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADESMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.286e-52
Identity = 104/239 (43.51%), Postives = 146/239 (61.09%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + +  GQ G Q+G+  WE+   EHGIQPDG    +  +    +  + +++E   GK+VPRAV VDLEP  +D VR+G + QLF P+  + G+  A NN+A+GHYT G E+VD  LD IRK A+ C  LQGF + +++                  +Y  +    F+V PSP+VS +VVEPYN+ LS H L+E+TD    +DNEA+YDIC R+L +  PTY +LN LVS  +S +T
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGETDLQL--ERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICYRTLKLTNPTYGDLNHLVSLTMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB6_GOSHI (Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.597e-52
Identity = 96/239 (40.17%), Postives = 149/239 (62.34%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D +     +  + +++E   G++VPRAV +DLEP  +D +R+G   Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  + F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGVDPTGKYNGDGSSDIQLERIDVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPIGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMMTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 239          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.597e-52
Identity = 101/239 (42.26%), Postives = 147/239 (61.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGDSDLQL--ERINVYYNEASGGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB1_PEA (Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.597e-52
Identity = 99/239 (41.42%), Postives = 147/239 (61.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MR+ + I  GQ G Q+G   WE+ C EHGI P G+   D  +    +  + +++E   G+ VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R L +  P++ +LN L+S  +S +T
Sbjct:    1 MRQILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDSDLQL--ERIDVYYNEASGGRFVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB1_LUPAL (Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.597e-52
Identity = 101/239 (42.26%), Postives = 147/239 (61.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G Y Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYGGDNELQL--ERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB_CICAR (Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.310e-52
Identity = 99/242 (40.91%), Postives = 152/242 (62.81%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGD---DAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + +  GQ G Q+G+  WE+ C EHGI   G+  S+   GG D   +  N +++E   G++VPRAV +DLEP  ++ +R+G + ++F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LN L+S  +S +T
Sbjct:    1 MREILHVQGGQCGNQIGSKFWEVICDEHGIDQTGKYISE---GGSDTQLERINVYYNEASGGRYVPRAVLMDLEPGTMESIRSGPFGKIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLSTPSFGDLNHLISATMSGVT 239          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 7.310e-52
Identity = 100/239 (41.84%), Postives = 148/239 (61.92%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + I  GQ G Q+G   WE+ C EHG+   G+   D  +    +  N +++E   G++VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGDSDLQL--ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.547e-52
Identity = 101/239 (42.26%), Postives = 147/239 (61.51%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + I  GQ G Q+G   WE+ C EHGI   G+   D  +    +  N +++E   G+ VPRAV +DLEP  +D VR+G + Q+F P+  + G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF V +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  PT+ +LN L+S  +S +T
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQL--ERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVT 237          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.547e-52
Identity = 101/239 (42.26%), Postives = 146/239 (61.09%), Query Frame = 3
Query:   87 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLT 803
            MRE + +  GQ G Q+G   WE+   EHGI P G       V    +  N +++E   G++VPRAV +DLEP  +D +RTG + QLF P+  I G+  A NN+A+GHYT G E++D  LD +RK A+NC  LQGF + +++                  +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ D  ++LDNEA+YDIC R+L +  P++ +LNRL+S  +S  T
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVGTSRVQL--ERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCACLQGFQICHSLGGGTGSGMGTLLISKIKEEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGAT 237          
The following BLAST results are available for this feature:
BLAST of CX077949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB2_SOYBN4.286e-5242.26Tubulin beta-2 chain OS=Glycine max GN=TUBB2 PE=3 ... [more]
TBB2_CAEEL4.286e-5243.51Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB6_GOSHI5.597e-5240.17Tubulin beta-6 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB3_WHEAT5.597e-5242.26Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]
TBB1_PEA5.597e-5241.42Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=... [more]
TBB1_LUPAL5.597e-5242.26Tubulin beta-1 chain OS=Lupinus albus GN=TUBB1 PE=... [more]
TBB_CICAR7.310e-5240.91Tubulin beta chain OS=Cicer arietinum GN=TUBB PE=2... [more]
TBB5_GOSHI7.310e-5241.84Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB7_MAIZE9.547e-5242.26Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB7_GOSHI9.547e-5242.26Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A05-A10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077949 ID=CX077949; Name=CX077949; organism=Citrus sinensis; type=EST; length=807bp
CGTCTTAATAAACGCCTTCGTTTAGATTCAATTACTTCTTCTTTTGGCTG
TGTACGTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAGTGCAT
TTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGG
AACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGT
GATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGA
AACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGC
CCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCAC
CCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCG
TGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCA
TCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTC
AATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGA
GAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCT
ACCCATCTCCTCAGGTCTCCACATCTGTTGTTGAGCCTTACAACAGTGTC
CTCTCAACCCACTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGA
CAATGAGGCCATTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTC
CTACCTATACTAACCTCAATAGACTTGTTTCTCAGGTAATTTCTTCATTG
ACTGCCT
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