CX077949

Overview
NameCX077949
Unique NameCX077949
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7838 contig Csv1_Contig7838:27..819. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBD_MACFA (Tubulin delta chain OS=Macaca fascicularis GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 52/237 (21.94%), Postives = 106/237 (44.73%), Query Frame = 3
Query:   99 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTY---RQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 800
            +++ +GQ G Q+G   ++   L       G     +           FFSE   G  + RAV VD+EP VI++  +      R  +        K+ + NN+A G+   G    +  +D IRK  + C    GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ +++++N++++  + S+
Sbjct:    4 VTVQLGQCGNQIGFEVFDAL-LSDSHSSQGLCCKRENEAYQASCKERFFSEEENGVPIARAVLVDMEPKVINQTLSKAAQSGRWKYGQHACFCQKQGSGNNWAYGYSVHGPRHEESIMDLIRKEVEKCDSFSGFFIIMSMAGGTGSGIGAFVTQNLQDQYSNSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLVHENDAVHKICAKLMNIKQISFSDINQVLAHQLGSV 238          
BLAST of CX077949 vs. ExPASy Swiss-Prot
Match: TBD_MOUSE (Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 54/240 (22.50%), Postives = 109/240 (45.42%), Query Frame = 3
Query:   99 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEV-----RTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSL 800
            +++ +GQ G Q+G   ++ L+   H  Q  G                 FF E   G  V RAV VD+EP VI++      ++G +    H       K+ + NN+A G+   G +  +  ++ I+   + C  L GF +  ++                   Y    K+   ++P       +V+ YNS+L+   L   +D  ++ +N+A++ IC + ++I++ ++ +LN++++  + S+
Sbjct:    4 VTVQLGQCGNQIGFEVFDALFRDSHCSQ--GLCSKRDNEAYQASCRERFFREEENGVPVARAVLVDMEPKVINQTLSKAAQSGRWNYGQHTS--FCQKQGSGNNWAYGYSVHGPKHEESIMNLIQTEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQKLQDQYSSSLKMNQIIWPYG-TGEVIVQNYNSILTLSHLYRSSDALLIHENDAVHKICAKRMNIKQISFRDLNQVLAHQLGSV 238          
The following BLAST results are available for this feature:
BLAST of CX077949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBD_MACFA4.632e-1421.94Tubulin delta chain OS=Macaca fascicularis GN=TUBD... [more]
TBD_MOUSE2.542e-1222.50Tubulin delta chain OS=Mus musculus GN=Tubd1 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A05-A10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077949 ID=CX077949; Name=CX077949; organism=Citrus sinensis; type=EST; length=807bp
CGTCTTAATAAACGCCTTCGTTTAGATTCAATTACTTCTTCTTTTGGCTG
TGTACGTCGTCGTTTTTCTTCTCTTAATCTGCGAAAATGAGAGAGTGCAT
TTCAATCCATATCGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGG
AACTCTACTGCCTCGAGCACGGCATTCAGCCTGATGGCCAAATGCCAAGT
GATAAGACAGTCGGAGGTGGCGACGATGCTTTCAACACCTTTTTCAGTGA
AACAGGTGCAGGGAAGCACGTGCCTCGTGCTGTCTTTGTTGATCTTGAGC
CCACTGTCATTGATGAAGTGAGGACCGGAACTTACCGCCAGCTCTTCCAC
CCTGAGCAGCTCATCAGTGGCAAGGAAGACGCTGCCAACAACTTCGCCCG
TGGCCACTATACCATTGGTAAGGAGATTGTTGATCTCTGCCTTGACCGCA
TCAGGAAGCTGGCTGATAACTGCACTGGTCTCCAGGGATTCCTTGTTTTC
AATGCTGTTGGTGGAGGAACTGGCTCTGGTCTTGGGTCTCTTCTTCTGGA
GAGGTTGTCTGTTGACTATGGAAAGAAGTCAAAGTTGGGCTTCACTGTCT
ACCCATCTCCTCAGGTCTCCACATCTGTTGTTGAGCCTTACAACAGTGTC
CTCTCAACCCACTCCCTGTTGGAGCATACTGATGTGGCTGTTCTTCTCGA
CAATGAGGCCATTTATGACATCTGCAGGCGCTCCCTTGACATTGAACGTC
CTACCTATACTAACCTCAATAGACTTGTTTCTCAGGTAATTTCTTCATTG
ACTGCCT
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