CX077946

Overview
NameCX077946
Unique NameCX077946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077946 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.083e-11
Identity = 60/241 (24.90%), Postives = 105/241 (43.57%), Query Frame = 2
Query:   59 FLSWFCLYRNRSVSRTSETGSSEPSVQPGRNVGIELSIREARRFQME-ELSLATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKK--RPGAPTQEFID---EVRFLASIQHRNLVTLLGYCQENNLQFLIYEYIPNGSVSIHLY--GPSQVSRQKLEFKHRLSIXXXXXXXXXXXXXXXPRVVHKDFKTANVLVDEDFIAKVADAGLRNFL-GRTDV--AGPSSQVTADEIFLASEVKEF 748
            F  W CL ++   + + E    +   + G N        +      E E+ + T   +   ++G      +YK +L+DG + A+++    G   + F D    +R +  + H NLV L G+    + + +IY+++PNGS+    Y  G    S   L ++ RL I                + VH + K +N+L+  D   K+ D GL   L G T    AG SS++ + + +  S  +EF
Sbjct:  393 FRKWSCLRKDPETTPSEEEDEDDEDEESGYNANQRSGDNKLVTVDGEKEMEIETLLKASAYILGATGSSIMYKAVLEDGRVFAVRRLGENGLSQRRFKDFEPHIRAIGKLVHPNLVRLCGFYWGTDEKLVIYDFVPNGSLVNPRYRKGGGSSSPYHLPWETRLKI--AKGIARGLAYLHEKKHVHGNLKPSNILLGHDMEPKIGDFGLERLLTGETSYIRAGGSSRIFSSKRYTTSS-REF 630          

HSP 2 Score: 21.1718 bits (43), Expect = 8.083e-11
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  783 FGVFLLELVSGR 818
            FGV LLEL++G+
Sbjct:  670 FGVILLELLTGK 681          
BLAST of CX077946 vs. ExPASy Swiss-Prot
Match: SRK1_SPOLA (Tyrosine-protein kinase isoform SRK1 OS=Spongilla lacustris GN=SRK1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 50/183 (27.32%), Postives = 82/183 (44.81%), Query Frame = 2
Query:  242 IGEGKFGEVYKGLLQDGMLVAIKK-RPGAPT-QEFIDEVRFLASIQHRNLVTLLGYCQENNLQFLIYEYIPNGSVSIHLYGPSQVSRQKLEFKHRLSIXXXXXXXXXXXXXXXPRVVHKDFKTANVLVDEDFIAKVADAGLRNFLGRTDVAGPSSQVTADEIFLASEVKEFRRFSEKSDVYSF 784
            +G G+FGEV++GL      VA+K  +PG  + +EF+ E   +  ++H  L+ L   C +    +++ E +  GS+  +L G   V       K    +                  +H+D    N+LV E  I KVAD GL   +   ++    +       + A E   + RF+ KSDV+SF
Sbjct:  246 LGAGQFGEVWEGLWNGTTSVAVKTLKPGTMSVEEFLQEASIMKRLRHPKLIQLYAVCTKEEPIYIVTELMKYGSLLEYLRGEDGV------LKIEQLVDVAAQVASGMSYLEQQNYIHRDLAARNILVGEHGICKVADFGLARVIDE-EIYEAHTGAKFPIKWTAPEAAMYNRFTIKSDVWSF 421          
BLAST of CX077946 vs. ExPASy Swiss-Prot
Match: SRC_RSVPA (Tyrosine-protein kinase transforming protein Src OS=Rous sarcoma virus (strain PA101T) GN=V-SRC PE=3 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 58/207 (28.02%), Postives = 92/207 (44.44%), Query Frame = 2
Query:  173 REARRFQMEELSLATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKK-RPGAPTQE-FIDEVRFLASIQHRNLVTLLGYCQENNLQFLIYEYIPNGSVSIHLYGPSQVSRQKLEFKHRLSIXXXXXXXXXXXXXXXPRVVHKDFKTANVLVDEDFIAKVADAGLRNFLGRTD-VAGPSSQVTADEIFLASEVKEFRRFSEKSDVYSF 784
            ++A     E L L  K       +G+G FGEV+ G       VAIK  +PG  + E F+ E + +  ++H  LV L     E  + +++ EY+  GS+   L G      +  +      +                  VH+D + AN+LV E+ + KVAD GL   +   +  A P ++      + A E   + RF+ KSDV+SF
Sbjct:  254 KDAWEIPRESLRLEVK-------LGQGYFGEVWMGTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAMVSEEPI-YIVIEYMSKGSLLDFLKGEMGKYLRLPQL-----VEMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARPGARFPVK--WTAPEAALYGRFTIKSDVWSF 445          
BLAST of CX077946 vs. ExPASy Swiss-Prot
Match: SRC_RSVP (Tyrosine-protein kinase transforming protein Src OS=Rous sarcoma virus (strain Prague C) GN=V-SRC PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 57/206 (27.67%), Postives = 90/206 (43.69%), Query Frame = 2
Query:  173 REARRFQMEELSLATKNFSDKNLIGEGKFGEVYKGLLQDGMLVAIKK-RPGAPTQE-FIDEVRFLASIQHRNLVTLLGYCQENNLQFLIYEYIPNGSVSIHLYGPSQVSRQKLEFKHRLSIXXXXXXXXXXXXXXXPRVVHKDFKTANVLVDEDFIAKVADAGLRNFLGRTDVAGPSSQVTADEIFLASEVKEFRRFSEKSDVYSF 784
            ++A     E L L  K       +G+G FGEV+ G   D   VAIK  +PG  + E F+ E + +  ++H  LV L     E  + +++ EY+  GS+   L G      +  +      +                  VH+D + AN+LV E+ + KVAD GL   +   +           + + A E   + RF+ KSDV+SF
Sbjct:  257 KDAWEIPRESLRLEAK-------LGQGCFGEVWMGTWNDTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVIEYMSKGSLLDFLKGEMGKYLRLPQL-----VDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIK-WTAPEAALYGRFTIKSDVWSF 448          
BLAST of CX077946 vs. ExPASy Swiss-Prot
Match: M3K2_ARATH (Mitogen-activated protein kinase kinase kinase 2 OS=Arabidopsis thaliana GN=ANP2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.047e-11
Identity = 57/204 (27.94%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  239 LIGEGKFGEVYKGL-LQDGMLVAIKK-----------RPGAPTQEFIDEVRFLASIQHRNLVTLLGYCQENNLQFLIYEYIPNGSVS--IHLYG--PSQVSRQ-------KLEFKHRLSIXXXXXXXXXXXXXXXPRVVHKDFKTANVLVDEDFIAKVADAGLRNFLGRTDVAGPSSQVTADEIFLASEVKEFRRFSEKSDVYS 781
            LIG G FG VY G+ L  G L+A+K+           +  A  QE  +EV+ L ++ H N+V  LG  +E+    ++ E++P GS+S  +  +G  P  V R         LE+ H  +I                  +H+D K AN+LVD     K+AD G    +        +  +     ++A EV      S  +D++S
Sbjct:   73 LIGRGAFGTVYMGMNLDSGELLAVKQVLITSNCASKEKTQAHIQELEEEVKLLKNLSHPNIVRYLGTVREDETLNILLEFVPGGSISSLLEKFGAFPESVVRTYTNQLLLGLEYLHNHAI------------------MHRDIKGANILVDNQGCIKLADFGASKQVAELATISGAKSMKGTPYWMAPEVILQTGHSFSADIWS 258          
The following BLAST results are available for this feature:
BLAST of CX077946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
Y4372_ARATH8.083e-1124.90Probable LRR receptor-like serine/threonine-protei... [more]
SRK1_SPOLA9.047e-1127.32Tyrosine-protein kinase isoform SRK1 OS=Spongilla ... [more]
SRC_RSVPA9.047e-1128.02Tyrosine-protein kinase transforming protein Src O... [more]
SRC_RSVP9.047e-1127.67Tyrosine-protein kinase transforming protein Src O... [more]
M3K2_ARATH9.047e-1127.94Mitogen-activated protein kinase kinase kinase 2 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A04-A8-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077946 ID=CX077946; Name=CX077946; organism=Citrus sinensis; type=EST; length=861bp
CCTTGCAGCAATATTTGGAGCTGCTGCAGGAGCTGTGGCATTGATGGGAA
TAATTTTCTTTCTTAGTTGGTTCTGCTTGTATCGAAATCGGAGTGTTTCC
AGAACTTCTGAGACAGGGTCTTCAGAGCCATCTGTTCAACCGGGAAGAAA
TGTCGGGATCGAGTTATCAATTCGAGAAGCTAGGCGATTTCAGATGGAAG
AGTTGTCTTTGGCCACCAAAAACTTTAGTGATAAAAACTTGATTGGAGAA
GGAAAGTTTGGGGAGGTATACAAGGGATTGCTTCAAGATGGGATGCTTGT
AGCCATCAAAAAGCGACCTGGAGCACCTACTCAGGAATTTATTGATGAGG
TACGCTTCCTTGCATCTATTCAACATCGGAATCTTGTCACTCTTCTGGGT
TACTGTCAAGAAAATAATTTACAATTTCTTATATACGAGTATATACCCAA
TGGAAGTGTTTCCATTCACCTGTATGGACCCAGTCAAGTTTCCCGACAGA
AGCTAGAGTTCAAGCATAGACTTTCAATAGCTCTTGGGGCAGCTAAAGGT
CTGGCTCATCTTCACTCCCTGAGTCCACGTGTAGTACATAAGGATTTTAA
AACAGCAAATGTTCTTGTTGATGAAGATTTCATAGCTAAGGTTGCAGATG
CAGGACTTCGTAATTTTCTAGGGAGAACCGATGTTGCAGGGCCATCCTCA
CAAGTGACAGCAGATGAGATATTTCTTGCTTCAGAGGTGAAAGAGTTCAG
AAGATTTTCAGAAAAAAGTGATGTGTATAGTTTTTGGGGTTTTTCTTTTG
GAGCTAGTAAGCGGGCGAGAAGCATCATCTTCACTGTCTCCAGATTCCAG
TCAGGACCTGG
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