CX077943

Overview
NameCX077943
Unique NameCX077943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4902 contig Csv1_Contig4902:1..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  415 YPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFF 681
            YP CP+PEL  G  +H D+  + +L QD  + GLQ+L + EW++V P+  ++VVN+GD +++I+N K+KSV HRV+A+  G R+S+A F+
Sbjct:  160 YPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGKYKSVMHRVVAQTNGNRMSIASFY 249          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.288e-18
Identity = 48/129 (37.21%), Postives = 81/129 (62.79%), Query Frame = 1
Query:  415 YPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELL---SEENPPIYKEITVKEYL 789
            YP CP+P+L  G  +H D+  + +L QD ++ GLQ+L + +W++V P+  ++VVNLGD +++I+N K+KSV HRV+A+  G R+S+A F+        A  Y P   L+   +EE+  +Y +    +Y+
Sbjct:  162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDEQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFYN---PGSDAVIY-PAKTLVEKEAEESTQVYPKFVFDDYM 286          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 50/127 (39.37%), Postives = 69/127 (54.33%), Query Frame = 1
Query:  409 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYL 789
            +YYP C +P+LT+GT  H D + LT+L QD + GLQV  EN+W ++ P   A VVN+GD    +SND++KS  HR +      R S+A F       +K R   P  ELL       Y + T   +L
Sbjct:  230 NYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESERKSLAFF----LCPKKDRVVTPPRELLDSITSRRYPDFTWSMFL 352          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1
Query:  409 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHEN--EWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACF 678
            ++YP CP+P+LT+G   H D   +T+LLQD++GGLQ   ++   W+ V P+ GA VVNLGD   L+SN +FK+ +H+ +      R+S+A F
Sbjct:  201 NFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSNSSRLSIATF 292          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 41/90 (45.56%), Postives = 65/90 (72.22%), Query Frame = 1
Query:  415 YPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFF 681
            YP CP+P+L  G  +H D+  + +L QD ++ GLQ+L +  WV+V P+  ++VVNLGD +++I+N K+KSV HRV+A+  G R+S+A F+
Sbjct:  168 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFY 257          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: G2OX8_ARATH (Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 48/130 (36.92%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  397 FLLGHYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEY 786
            +L  + YP CP+P    G   H DS FLT+L QD++GGLQ++ +N W+ V P   AL++N+GD+ Q  SN  +KSV HRV+      R S A F            Y  + E  S+   P Y+  + +E+
Sbjct:  194 YLRMNRYPPCPKPSEVYGLMPHTDSDFLTILYQDQVGGLQLIKDNRWIAVKPNPKALIINIGDLFQAWSNGMYKSVEHRVMTNPKVERFSTAYFM--------CPSYDAVIECSSDR--PAYRNFSFREF 313          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 40/90 (44.44%), Postives = 66/90 (73.33%), Query Frame = 1
Query:  415 YPTCPEPELTMGTDSHADSSFLTVLLQD-RLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFF 681
            YP CP+P+L  G  +H D+  + +L QD ++ GLQ+L + +W++V P+  ++VVNLGD +++I+N K+KSV HRV+A+  G R+S+A F+
Sbjct:  162 YPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVLHRVIAQTDGTRMSLASFY 251          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: LDOX_ARATH (Leucoanthocyanidin dioxygenase OS=Arabidopsis thaliana GN=LDOX PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 43/129 (33.33%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  409 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSH 795
            +YYP CP+PEL +G ++H D S LT +L + + GLQ+ +E +WV    +  ++V+++GD ++++SN K+KS+ HR L      R+S A F          +   P+ E++S E+P  +   T  +++ H
Sbjct:  215 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLK---PLPEMVSVESPAKFPPRTFAQHIEH 340          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 47/127 (37.01%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  409 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYL 789
            +YYP C  P  T+GT  H D + LT+L QD +GGL+V  E  W  + P  GALVVN+GD    +SN +++S  HR +     PR S+A F      +       P  EL+ + +P +Y + T +  L
Sbjct:  217 NYYPACQRPLDTLGTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNSTAPRRSLAFFLCPEMDTV----VRPPEELVDDHHPRVYPDFTWRALL 339          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: FL3H_CALCH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Callistephus chinensis GN=FHT PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  409 HYYPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLHE--NEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACF 678
            +YYP CP+P+LT+G   H D   +T+LLQD++GGLQ   +    W+ V P+ GA VVNLGD    +SN +FK+ +H+ +      R+S+A F
Sbjct:  198 NYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDGGESWITVKPVEGAFVVNLGDHGHYLSNGRFKNADHQAVVNSSTSRLSIATF 289          
The following BLAST results are available for this feature:
BLAST of CX077943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO_DENCR5.288e-1845.561-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
ACCO1_SOLLC5.288e-1837.211-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
GAOX1_ARATH6.906e-1839.37Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
FL3H_MALDO6.906e-1843.48Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
ACCO_DIACA6.906e-1845.56Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
G2OX8_ARATH9.019e-1836.92Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis th... [more]
ACCO3_PETHY9.019e-1844.441-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
LDOX_ARATH1.178e-1733.33Leucoanthocyanidin dioxygenase OS=Arabidopsis thal... [more]
GAOX1_ORYSJ1.178e-1737.01Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
FL3H_CALCH1.178e-1743.48Naringenin,2-oxoglutarate 3-dioxygenase OS=Callist... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_6A01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A01-A2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077943 ID=CX077943; Name=CX077943; organism=Citrus sinensis; type=EST; length=806bp
CGAATTCATTATCCCAATCCTTGACTTGGATGGTGTCAATAAAGATGCCA
TTTCACGGGCCAAGATAGTCAAGCAAGTTCAAAATGCATGCCAGAACTGG
GGGTTCTTTCAAATTGTCAATCATGGAATTCCAGTTAGCATGTTGGATGA
AATGATTGATGGGGTAATTGGATTTCATGAGCAAGATACTGAGGTGAAAA
AGAAGTTCTATACGCGAGATTACCAGAAAAGGAAGGTGCTTTATAATACA
AATTTTGACTTTTATGCAGCACCAGCAGCTAATTGGAGAGATACCCTCAG
TTGCGTTATGGCTCCTAATCCACCTGATCCTGAAGAATTGCCAGAGGTAT
GCAGAGATATAATCGCCTGAAAGACATGGATTGCGCAGAGGGACTGTTCT
TGTTAGGCCATTACTACCCAACATGCCCTGAACCAGAGTTGACTATGGGA
ACTGACAGCCATGCTGATAGTAGCTTCCTTACTGTGCTCCTACAAGACAG
ACTTGGTGGCCTCCAAGTCCTCCATGAAAATGAATGGGTCAATGTTACAC
CCATTTATGGAGCTCTAGTGGTAAATCTCGGAGACATGATGCAGCTGATT
TCCAATGACAAGTTTAAGAGCGTGAATCACAGAGTTCTTGCTAAAGATGT
TGGTCCACGAGTGTCTGTGGCATGTTTCTTCAGATCACATTTTCAATCAG
AGAAAGCAAGGCGTTATGGGCCAATCAACGAGTTACTCTCAGAAGAGAAC
CCGCCAATATACAAGGAAATCACTGTGAAAGAGTACCTGTCACACAGTTA
CTCAAT
back to top