CX077943

Overview
NameCX077943
Unique NameCX077943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4902 contig Csv1_Contig4902:1..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 50/153 (32.68%), Postives = 80/153 (52.29%), Query Frame = 1
Query:  361 NRLKDMDCAEGLFLLGHYYPTCPEPELT----MGTDSHADSSFLTVLLQDRLGGLQV-LHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYS 804
            +RL   + ++  F L HY P CPE +      +G   H D   ++VL  +   GLQ+ L +  WV+V P   +  +N+GD +Q+++N +FKSV HRVLA     R+S+  +F     SE      P+  ++ +    +YKE T  EY   +Y+
Sbjct:  168 SRLLKDEKSDSCFRLNHY-PPCPEVQALNRNLVGFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTTKSRLSM-IYFGGPALSE---NIAPLPSVMLKGEECLYKEFTWCEYKKAAYT 315          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.736e-13
Identity = 44/136 (32.35%), Postives = 73/136 (53.68%), Query Frame = 1
Query:  403 LGHYYPTCPEPE--LTMGTDSHADSSFLTVLLQDRLGGLQV-LHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSY 801
            L HY     E E  + +G   H D   ++VL  +   GLQ+ + +  WV V P + +  +N+GD +Q+++N +FKSV HRVLA     R+S+  F         +++  P+  L+ E++  +YKE T  +Y S +Y
Sbjct:  186 LNHYPAAEEEAEKMVKVGFGEHTDPQIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTRRSRISMIYFGGPPL----SQKIAPLPCLVPEQDDWLYKEFTWSQYKSSAY 317          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 40/132 (30.30%), Postives = 71/132 (53.79%), Query Frame = 1
Query:  415 YPTCPEPELTMGTDSHADSSFLTVLLQDRLGGLQVLH--ENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYS 804
            YP+ P     +G   H D+  LT++ QD + GL++L    N +++V+P  GAL+ NLGD+M +++N+++KS  HRV       R ++  F + +     A    P+  L      PI  E  ++++  +SY+
Sbjct:  264 YPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVA----PLPGLGPSTAEPIAVEDLLRDHFQNSYT 388          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.261e-11
Identity = 45/156 (28.85%), Postives = 82/156 (52.56%), Query Frame = 1
Query:  352 QRYNRLKDMDCAEGLFLLGHYYPTCPEPELT-----MGTDSHADSSFLTVLLQDRLGGLQV-LHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSY 801
            ++ +RL  +  ++    + HY    PE E T     +G   H D   +++L  +   GLQ+ + +  WV+VTP + +  V +GD +Q+++N +FKSV HRV+      R+S+  +F     SEK     P++ L+ +++  +Y E T  +Y   +Y
Sbjct:  165 EKLSRLVKVKESDSCLRMNHY----PEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISM-IYFAGPPLSEK---IAPLSCLVPKQDDCLYNEFTWSQYKLSAY 312          
BLAST of CX077943 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.177e-11
Identity = 36/121 (29.75%), Postives = 63/121 (52.07%), Query Frame = 1
Query:  445 MGTDSHADSSFLTVLLQDRLGGLQV-LHENEWVNVTPIYGALVVNLGDMMQLISNDKFKSVNHRVLAKDVGPRVSVACFFRSHFQSEKARRYGPINELLSEENPPIYKEITVKEYLSHSYS 804
            +G   H+D   LT+L  + +GGLQ+  H   W+ V P      V +GD +Q+++N +F SV HRVL     PR+S+  F              P++++++  +P +Y+  T  +Y   +Y+
Sbjct:  204 IGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLN----WLISPLSKMVTAHSPCLYRPFTWAQYKQAAYA 320          
The following BLAST results are available for this feature:
BLAST of CX077943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX_PHACN1.348e-1332.68Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
G2OX2_ARATH8.736e-1332.35Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
ISP7_SCHPO6.261e-1130.30Sexual differentiation process protein isp7 OS=Sch... [more]
G2OX3_ARATH6.261e-1128.85Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX2_PEA8.177e-1129.75Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6A01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6A01-A2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077943 ID=CX077943; Name=CX077943; organism=Citrus sinensis; type=EST; length=806bp
CGAATTCATTATCCCAATCCTTGACTTGGATGGTGTCAATAAAGATGCCA
TTTCACGGGCCAAGATAGTCAAGCAAGTTCAAAATGCATGCCAGAACTGG
GGGTTCTTTCAAATTGTCAATCATGGAATTCCAGTTAGCATGTTGGATGA
AATGATTGATGGGGTAATTGGATTTCATGAGCAAGATACTGAGGTGAAAA
AGAAGTTCTATACGCGAGATTACCAGAAAAGGAAGGTGCTTTATAATACA
AATTTTGACTTTTATGCAGCACCAGCAGCTAATTGGAGAGATACCCTCAG
TTGCGTTATGGCTCCTAATCCACCTGATCCTGAAGAATTGCCAGAGGTAT
GCAGAGATATAATCGCCTGAAAGACATGGATTGCGCAGAGGGACTGTTCT
TGTTAGGCCATTACTACCCAACATGCCCTGAACCAGAGTTGACTATGGGA
ACTGACAGCCATGCTGATAGTAGCTTCCTTACTGTGCTCCTACAAGACAG
ACTTGGTGGCCTCCAAGTCCTCCATGAAAATGAATGGGTCAATGTTACAC
CCATTTATGGAGCTCTAGTGGTAAATCTCGGAGACATGATGCAGCTGATT
TCCAATGACAAGTTTAAGAGCGTGAATCACAGAGTTCTTGCTAAAGATGT
TGGTCCACGAGTGTCTGTGGCATGTTTCTTCAGATCACATTTTCAATCAG
AGAAAGCAAGGCGTTATGGGCCAATCAACGAGTTACTCTCAGAAGAGAAC
CCGCCAATATACAAGGAAATCACTGTGAAAGAGTACCTGTCACACAGTTA
CTCAAT
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