CX077939
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.108e-12 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ FQR + F + +F V+++D VF ++ + L H+ ++LQ+C + ++L+ K K+ I+ G+E+D+ Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454 HSP 2 Score: 36.1946 bits (82), Expect = 5.108e-12 Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +I +++ +PL L ++VP+ + + +K+K+ L P + P + DA + G +L+ ++++ + + YAS + A NY + KE LAV+ ++KF YL Sbjct: 493 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYL 611
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.108e-12 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ FQR + F + +F V+++D VF ++ + L H+ ++LQ+C + ++L+ K K+ I+ G+E+D+ Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454 HSP 2 Score: 36.1946 bits (82), Expect = 5.108e-12 Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +I +++ +PL L ++VP+ + + +K+K+ L P + P + DA + G +L+ ++++ + + YAS + A NY + KE LAV+ ++KF YL Sbjct: 493 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYL 611
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 5.109e-12 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ FQR + F + +F V+++D VF ++ + L H+ ++LQ+C + ++L+ K K+ I+ G+E+D+ Sbjct: 353 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 449 HSP 2 Score: 36.1946 bits (82), Expect = 5.109e-12 Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +I +++ +PL L ++VP+ + + +K+K+ L P + P + DA + G +L+ ++++ + + YAS + A NY + KE LAV+ ++KF YL Sbjct: 488 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYL 606
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 6.632e-12 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ FQR + F + +F V+++D VF ++ + L H+ ++LQ+C + ++L+ K K+ I+ G+E+D+ Sbjct: 358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454 HSP 2 Score: 35.8094 bits (81), Expect = 6.632e-12 Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +I +++ +PL L ++VP+ + + +K+K+ L P + P + DA + G +L+ ++++ + + YAS + A NY + KE LAV+ ++KF YL Sbjct: 493 YIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYL 611
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 1.995e-11 Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 3 Query: 393 GFYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYA 599 G+YRRF+K + K+ RPL LL K+ + + +AF+ LK +T+ P++ P+ LPF +N++ Sbjct: 74 GYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFVTRVGKWNWS 141 HSP 2 Score: 41.9726 bits (97), Expect = 1.995e-11 Identity = 24/67 (35.82%), Postives = 33/67 (49.25%), Query Frame = 1 Query: 184 LHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGH--IISSKGIEVDKAKADLISNLPPPKTVKEVR 378 ++HL +VLQ + N KC F Q GH IIS +G+ D AK + + P PK E+R Sbjct: 1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR 67
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1) HSP 1 Score: 48.1358 bits (113), Expect = 2.447e-11 Identity = 31/122 (25.41%), Postives = 61/122 (50.00%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYLIVCKIIV 773 +I + + +PL + L +D + ++D+ K+K+ L S P + P + + DA G +L+ + ++ YAS + A NY + +KE+LAV+ ++KF YL + ++ Sbjct: 477 YIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLI 598 HSP 2 Score: 41.5874 bits (96), Expect = 2.447e-11 Identity = 27/106 (25.47%), Postives = 54/106 (50.94%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLH-HLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ F + + ++ V+++D VF ++ + H+ +L+RC + ++L+ K+ +F I+ G+E+D+ Sbjct: 340 TAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILS-------KKKAQLFKEKINFLGLEIDQ 438
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 4.118e-11 Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1 Query: 7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321 T FTCP G + + + FGL AP+ FQR + F + +F V+++D VF ++ + L H+ ++LQ+C + ++L+ K K+ I+ G+E+D+ Sbjct: 359 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 455 HSP 2 Score: 33.113 bits (74), Expect = 4.118e-11 Identity = 29/119 (24.37%), Postives = 58/119 (48.74%), Query Frame = 3 Query: 408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752 +I +++ +PL L ++VP+ + + +K+K+ L P + P + DA + G +L+ ++++ + + Y S + A NY + KE LAV+ ++KF YL Sbjct: 494 YIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYL 612 The following BLAST results are available for this feature:
BLAST of CX077939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 17
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX077939 ID=CX077939; Name=CX077939; organism=Citrus sinensis; type=EST; length=774bpback to top |