CX077939

Overview
NameCX077939
Unique NameCX077939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.108e-12
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ FQR  +   F +  +F  V+++D  VF ++ +  L H+ ++LQ+C +  ++L+  K     K+       I+  G+E+D+
Sbjct:  358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454          

HSP 2 Score: 36.1946 bits (82), Expect = 5.108e-12
Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752
            +I   +++ +PL   L ++VP+ +     +  +K+K+ L   P +  P       +  DA +   G +L+  ++++  +   +  YAS +   A  NY +  KE LAV+  ++KF  YL
Sbjct:  493 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYL 611          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.108e-12
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ FQR  +   F +  +F  V+++D  VF ++ +  L H+ ++LQ+C +  ++L+  K     K+       I+  G+E+D+
Sbjct:  358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454          

HSP 2 Score: 36.1946 bits (82), Expect = 5.108e-12
Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752
            +I   +++ +PL   L ++VP+ +     +  +K+K+ L   P +  P       +  DA +   G +L+  ++++  +   +  YAS +   A  NY +  KE LAV+  ++KF  YL
Sbjct:  493 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAERNYHSNDKETLAVINTIKKFSIYL 611          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 5.109e-12
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ FQR  +   F +  +F  V+++D  VF ++ +  L H+ ++LQ+C +  ++L+  K     K+       I+  G+E+D+
Sbjct:  353 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 449          

HSP 2 Score: 36.1946 bits (82), Expect = 5.109e-12
Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752
            +I   +++ +PL   L ++VP+ +     +  +K+K+ L   P +  P       +  DA +   G +L+  ++++  +   +  YAS +   A  NY +  KE LAV+  ++KF  YL
Sbjct:  488 YIPKLAQIRKPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYL 606          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 6.632e-12
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ FQR  +   F +  +F  V+++D  VF ++ +  L H+ ++LQ+C +  ++L+  K     K+       I+  G+E+D+
Sbjct:  358 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDILVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 454          

HSP 2 Score: 35.8094 bits (81), Expect = 6.632e-12
Identity = 30/119 (25.21%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752
            +I   +++ +PL   L ++VP+ +     +  +K+K+ L   P +  P       +  DA +   G +L+  ++++  +   +  YAS +   A  NY +  KE LAV+  ++KF  YL
Sbjct:  493 YIPKLAQIRKPLQAKLKENVPWRWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYASGSFKAAEKNYHSNDKETLAVINTIKKFSIYL 611          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: M860_ARATH (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.995e-11
Identity = 24/69 (34.78%), Postives = 41/69 (59.42%), Query Frame = 3
Query:  393 GFYRRFIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYA 599
            G+YRRF+K + K+ RPL  LL K+    + +   +AF+ LK  +T+ P++  P+  LPF      +N++
Sbjct:   74 GYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPFVTRVGKWNWS 141          

HSP 2 Score: 41.9726 bits (97), Expect = 1.995e-11
Identity = 24/67 (35.82%), Postives = 33/67 (49.25%), Query Frame = 1
Query:  184 LHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGH--IISSKGIEVDKAKADLISNLPPPKTVKEVR 378
            ++HL +VLQ   +     N  KC F   Q    GH  IIS +G+  D AK + +   P PK   E+R
Sbjct:    1 MNHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELR 67          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 2.447e-11
Identity = 31/122 (25.41%), Postives = 61/122 (50.00%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQRVDQIPHVIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYLIVCKIIV 773
            +I   + + +PL + L +D  + ++D+      K+K+ L S P +  P  +    +  DA     G +L+   +   ++  YAS +   A  NY + +KE+LAV+  ++KF  YL   + ++
Sbjct:  477 YIPKLASIRKPLQSKLKEDSTWTWNDTDSQYMAKIKKNLKSFPKLYHPEPNDKLVIETDASEEFWGGILKAIHNSHEYICRYASGSFKAAERNYHSNEKELLAVIRVIKKFSIYLTPSRFLI 598          

HSP 2 Score: 41.5874 bits (96), Expect = 2.447e-11
Identity = 27/106 (25.47%), Postives = 54/106 (50.94%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLH-HLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ F +   +       ++  V+++D  VF ++     + H+  +L+RC +  ++L+        K+  +F   I+  G+E+D+
Sbjct:  340 TAFTCPQGHYQWNVVPFGLKQAPSIFPKTYANSHSNQYSKYCCVYVDDILVFSNTGRKEHYIHVLNILRRCEKLGIILS-------KKKAQLFKEKINFLGLEIDQ 438          
BLAST of CX077939 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 4.118e-11
Identity = 32/105 (30.48%), Postives = 58/105 (55.24%), Query Frame = 1
Query:    7 TIFTCPFGTFAYKRMSFGLCNAPATFQRCILSIFFYMVERFLEVFMNDFSVFGDSFD*CLHHLTLVLQRCIEKNLVLNWDKCHFMVKQCIIFGHIISSKGIEVDK 321
            T FTCP G + +  + FGL  AP+ FQR  +   F +  +F  V+++D  VF ++ +  L H+ ++LQ+C +  ++L+  K     K+       I+  G+E+D+
Sbjct:  359 TAFTCPQGHYEWNVVPFGLKQAPSIFQR-HMDEAFRVFRKFCCVYVDDIVVFSNNEEDHLLHVAMILQKCNQHGIILSKKKAQLFKKK-------INFLGLEIDE 455          

HSP 2 Score: 33.113 bits (74), Expect = 4.118e-11
Identity = 29/119 (24.37%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  408 FIKYFSKVSRPL*NLLAKDVPFVFDDSCLVAFEKLKQLLTSSPIIQPPNWSLPFELMYDAFNYAIGAVLRQ-RVDQIPH---VIYYASMTLNDA*LNYSTTKKEMLAVMFALEKFRSYL 752
            +I   +++ +PL   L ++VP+ +     +  +K+K+ L   P +  P       +  DA +   G +L+  ++++  +   +  Y S +   A  NY +  KE LAV+  ++KF  YL
Sbjct:  494 YIPNLAQMRQPLQAKLKENVPWKWTKEDTLYMQKVKKNLQGFPPLHHPLPEEKLIIETDASDDYWGGMLKAIKINEGTNTELICRYRSGSFKAAERNYHSNDKETLAVINTIKKFSIYL 612          
The following BLAST results are available for this feature:
BLAST of CX077939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
POL_CAMVE5.108e-1230.48Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC5.108e-1230.48Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD5.109e-1230.48Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVS6.632e-1230.48Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
M860_ARATH1.995e-1134.78Uncharacterized mitochondrial protein AtMg00860 OS... [more]
POL_CERV2.447e-1125.41Enzymatic polyprotein OS=Carnation etched ring vir... [more]
POL_CAMVN4.118e-1130.48Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5H11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H11-O21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077939 ID=CX077939; Name=CX077939; organism=Citrus sinensis; type=EST; length=774bp
GAGAAAACCATTTTCACTTGCCCTTTTGGCACTTTTGCATATAAGAGGAT
GTCATTTGGATTATGTAATGCACCTGCTACATTTCAACGATGCATATTGA
GCATTTTTTTTTATATGGTTGAACGATTCCTTGAAGTCTTTATGAATGAC
TTTTCTGTCTTTGGTGATTCATTTGATTAATGTTTACATCATCTAACACT
AGTTCTGCAGAGATGTATCGAGAAGAACTTAGTCTTAAATTGGGACAAAT
GTCATTTTATGGTAAAACAATGTATTATTTTCGGTCACATCATTTCGAGT
AAAGGTATTGAGGTTGACAAAGCCAAGGCGGATCTCATTTCTAATCTTCC
TCCACCCAAAACAGTCAAAGAAGTAAGATCTTTGAGCATGCTGGTTTTTA
TAGACGTTTCATTAAATATTTTAGCAAAGTTTCTAGACCCTTATAAAATT
TACTTGCTAAAGATGTACCTTTTGTCTTTGATGATTCATGTCTTGTGGCA
TTTGAAAAATTAAAGCAGTTGTTGACATCATCACCCATAATTCAGCCCCC
AAACTGGAGCTTACCATTTGAACTCATGTATGATGCATTTAATTATGCAA
TAGGAGCAGTATTAAGACAAAGAGTTGATCAAATTCCCCATGTTATTTAC
TATGCTAGTATGACATTGAATGATGCATAGTTGAACTATTCAACTACTAA
AAAAGAAATGCTAGCAGTAATGTTTGCATTGGAAAAATTTCGATCTTATC
TTATCGTTTGTAAAATAATTGTGT
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