CX077932

Overview
NameCX077932
Unique NameCX077932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_TAMCI (Cytochrome c oxidase subunit 2 OS=Tamias cinereicollis GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_TAMCA (Cytochrome c oxidase subunit 2 OS=Tamias canipes GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_TAMAM (Cytochrome c oxidase subunit 2 OS=Tamias amoenus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 94/153 (61.44%), Postives = 124/153 (81.05%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P+IIL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP  DL  G+LRLLEVDNRVV+P +  +R++++S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G+YYGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAIILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLNFDSYMIPTSDLSPGELRLLEVDNRVVLPMELPIRMLISSEDVLHSWAVPSLGLKTDAIPGRLNQATLTSTRPGLYYGQCSEICGSNHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_SUNME (Cytochrome c oxidase subunit 2 OS=Sundamys muelleri GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 93/153 (60.78%), Postives = 126/153 (82.35%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P++IL+ IA+PS  +LY MDE+  +PA+T+K +GHQWYW+YEY+DY     + L FDSYMIP +DL+ G+LRLLEVDNRVV+P +  +R++V+S DVLHSWAVPSLG+K DA+PGRLNQ +++  R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAVILILIALPSLRILYMMDEIN-NPALTVKTMGHQWYWSYEYTDY-----EDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLVSSEDVLHSWAVPSLGLKTDAIPGRLNQATVTSNRPGLFYGQCSEICGSNHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_HAPGR (Cytochrome c oxidase subunit 2 OS=Hapalemur griseus GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 91/153 (59.48%), Postives = 122/153 (79.74%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P+ IL+ IA+PS  +LY MDE+   P++T+K +GHQWYW+YEY+DY     ++L FDSYM+P  DL+ G+LRLLEVDNR+V+P +  +R++++S DVLHSWAVPSLGVK DA+PGRLNQ ++   R G+YYGQCSEICG NH+FM
Sbjct:   61 VETVWTILPAAILILIALPSLRILYMMDEITT-PSLTLKTMGHQWYWSYEYTDY-----ENLCFDSYMVPSSDLKPGELRLLEVDNRIVLPTELSIRMLISSEDVLHSWAVPSLGVKTDAIPGRLNQATLMASRPGIYYGQCSEICGANHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DUGDU (Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=MT-CO2 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 92/153 (60.13%), Postives = 125/153 (81.70%), Query Frame = -2
Query:  304 IEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 762
            +E +WTI P++IL+ IA+PS  +LY MDE+  DP++T+K +GHQWYW+YEY+DY     + L FDSYMIP +DLE GQLRLLEVDNRVV+P +  +R++++S DVLHSWA+PS+G+K DA+PGRLNQ ++   R G++YGQCSEICG+NH+FM
Sbjct:   61 VETIWTILPAMILILIALPSLRILYMMDEIN-DPSLTVKTMGHQWYWSYEYTDY-----EDLTFDSYMIPTNDLEPGQLRLLEVDNRVVLPMEMPIRMLISSEDVLHSWAIPSMGLKTDAIPGRLNQATLMSSRPGLFYGQCSEICGSNHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DROPS (Cytochrome c oxidase subunit 2 OS=Drosophila pseudoobscura pseudoobscura GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 93/159 (58.49%), Postives = 126/159 (79.25%), Query Frame = -2
Query:  304 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 780
            ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   55 LLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DROPE (Cytochrome c oxidase subunit 2 OS=Drosophila persimilis GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 93/159 (58.49%), Postives = 126/159 (79.25%), Query Frame = -2
Query:  304 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 780
            ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   55 LLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DROMI (Cytochrome c oxidase subunit 2 OS=Drosophila miranda GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 93/159 (58.49%), Postives = 126/159 (79.25%), Query Frame = -2
Query:  304 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 780
            ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   55 LLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
BLAST of CX077932 vs. ExPASy Swiss-Prot
Match: COX2_DROLO (Cytochrome c oxidase subunit 2 OS=Drosophila lowei GN=mt:CoII PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.700e-53
Identity = 93/159 (58.49%), Postives = 126/159 (79.25%), Query Frame = -2
Query:  304 IVHGTTIEILWTIFPSIILMFIAIPSFALLYSMDEVVVDPAITIKAIGHQWYWTYEYSDYNSSDEQSLIFDSYMIPEDDLELGQLRLLEVDNRVVVPAKTHLRIIVTSADVLHSWAVPSLGVKCDAVPGRLNQISISVQREGVYYGQCSEICGTNHAFM 780
            ++HG  IE++WTI P+IIL+FIA+PS  LLY +DE+  +P+IT+K+IGHQWYW+YEYSD+N+ +     FDSYMIP ++L     RLL+VDNR+V+P  + +RI+VT+ADV+HSW VP+LGVK D  PGRLNQ +  + R G++YGQCSEICG NH+FM
Sbjct:   55 LLHGQLIEMIWTILPAIILLFIAMPSLRLLYLLDEIN-EPSITLKSIGHQWYWSYEYSDFNNVE-----FDSYMIPTNELSNDGFRLLDVDNRIVLPMNSQIRILVTAADVIHSWTVPALGVKVDGTPGRLNQTNFFINRPGLFYGQCSEICGANHSFM 207          
The following BLAST results are available for this feature:
BLAST of CX077932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 312
Match NameE-valueIdentityDescription
COX2_TAMCI5.700e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias cinereico... [more]
COX2_TAMCA5.700e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias canipes G... [more]
COX2_TAMAM5.700e-5361.44Cytochrome c oxidase subunit 2 OS=Tamias amoenus G... [more]
COX2_SUNME5.700e-5360.78Cytochrome c oxidase subunit 2 OS=Sundamys mueller... [more]
COX2_HAPGR5.700e-5359.48Cytochrome c oxidase subunit 2 OS=Hapalemur griseu... [more]
COX2_DUGDU5.700e-5360.13Cytochrome c oxidase subunit 2 OS=Dugong dugon GN=... [more]
COX2_DROPS5.700e-5358.49Cytochrome c oxidase subunit 2 OS=Drosophila pseud... [more]
COX2_DROPE5.700e-5358.49Cytochrome c oxidase subunit 2 OS=Drosophila persi... [more]
COX2_DROMI5.700e-5358.49Cytochrome c oxidase subunit 2 OS=Drosophila miran... [more]
COX2_DROLO5.700e-5358.49Cytochrome c oxidase subunit 2 OS=Drosophila lowei... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5H07-O13-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077932 ID=CX077932; Name=CX077932; organism=Citrus sinensis; type=EST; length=868bp
TACCGCGGCCCCCCCTCGAGTGCCAGCCGCAGAGAGGAATGCCATCAACT
AGGGCGCTATTGGCCACTAACCACTCGCTCGCCGGCCGTTCGGGCTCCGC
GTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCCACCGGGAGCCTGG
CCCCTTCTTCTATCTTATCTACTGCCTTGCTCCTCGGCTCCCTACAGCTC
CAGCCGCTCGCTGTAATAGCTTGCTTCTCGGGTGGCTCGCACCCCGGGTG
GTGCGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTTTCCGGGCGC
ACGCATAAAGGCATGATTAGTTCCACAAATCTCACTGCACTGACCATAGT
AAACTCCTTCTCGTTGTACCGAAATAGAGATCTGATTTAAACGACCAGGT
ACAGCATCACATTTGACACCTAAGGAAGGTACAGCCCAACTATGAAGTAC
ATCAGCAGATGTTACAATAATACGTAGATGAGTTTTGGCTGGTACAACCA
CTCTATTGTCCACTTCTAATAAACGTAATTGACCCAATTCTAGATCATCT
TCTGGAATCATATAACTGTCAAAAATGAGTGACTGTTCATCGGAACTGTT
ATAGTCTGAATACTCATAAGTCCAATACCATTGATGCCCAATAGCTTTGA
TAGTGATGGCTGGATCTACTACTACCTCGTCCATTGAGTATAACAGAGCA
AATGATGGTATAGCAATGAACATCAAGATGATACTAGGAAAGATGGTCCA
AAGAATCTCGATAGTAGTTCCATGAACAATCCTTTGCGGGATTGGATTTT
TTTTATAATGGAAATGCCATAAAGCACGAACCAAGATCCGTAATACGAAA
ACCAAAATCAGAATGAGA
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