CX077921

Overview
NameCX077921
Unique NameCX077921
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11571 contig Csv1_Contig11571:54..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: TCB3_YEAST (Tricalbin-3 OS=Saccharomyces cerevisiae GN=TCB3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.221e-13
Identity = 62/204 (30.39%), Postives = 107/204 (52.45%), Query Frame = 1
Query:    1 SIPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS------LTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNMEMIGKS-DPYAVVHIKPLF-----KVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFD-KDIGQDKRLGIVKLPLIDL 573
            ++PI ++D+ V   +R+  +  +  P I  V + LL EP P ID+ LK +GG       ++ +PG+   + + ++S I  ML  P+ + + +  I    S+  +   G +AVTI  A++LK  + I  + DPY V+  +        +V+T++  N  NP WN+T  L+    E Q L  + FD  D+ +D  +G ++L L DL
Sbjct:  389 TMPILVEDINVAGKMRIKVEFGKAFPNIKIVSLQLL-EP-PLIDFALKPIGGDTLGLDVMSFLPGLKSFVKNIINSNIGPMLFPPNHLDINVEDIMAAQSKEAI---GVLAVTIASADSLKGSDFITNTVDPYIVMTTEDAVPGTDEEVRTSIKSNVKNPRWNETKYLLLNTLE-QKLNLKCFDFNDVRKDTVIGDLQLDLADL 586          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: ESYT3_XENTR (Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.720e-13
Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   16 LKDLQVFTVIRVIFQ-LAEEIPCISAVVVALLSEPKPRIDYTLKAVGGSLTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELK-PQGKVAVTIVKANNLKNME------MIGKSDPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDKDIGQDKRLGIVKLPL 564
            +K +Q+   +RVI   L  ++P + AV +  +  P   I++T      ++  IPG++D  D  +  +I   L  P+R  VP+    V  ++L    P G + + +++A +L   +      + GKSDPYAV+ I      K+  +  NLNP W + +E +  +   Q L  +++D+D  +D  LG + + L
Sbjct:  254 VKGVQLHGTLRVILAPLLPDLPFVGAVTMFFIQRPHLDINWTGLT---NVLEIPGVSDFSDSMIVDMIASHLVLPNRFTVPLSS-QVQAAQLRFPLPHGVLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQ-NFKSRTIKENLNPKWGEMYEFVVHEVPGQDLEVDLYDEDPDKDDFLGSLVIGL 439          
BLAST of CX077921 vs. ExPASy Swiss-Prot
Match: TCB2_YEAST (Tricalbin-2 OS=Saccharomyces cerevisiae GN=TCB2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 56/201 (27.86%), Postives = 97/201 (48.26%), Query Frame = 1
Query:    4 IPIQLKDLQVFTVIRVIFQLAEEIPCISAVVVALLSEPKPRIDYTLKAVGGS-----LTAIPGIADMIDDTVDSIITDMLQWPHRIVVPIGGIPVDTSELELKPQGKVAVTIVKANNLKNME-MIGKS-DPYAVVHIKPLFKVKTNVVDNNLNPVWNQTFELIAEDKETQSLIFEVFDK-DIGQDKRLGIVKLPLIDLEAD 582
            IP+ + D+     +R  FQL   +P +  + + LL  P+  +D+  + +G S     + AIPG+  +I       ++ +L  P  + +    IP   S+  L P G + + +  A+ L+ +  MI K+ DPY    +      KT V  N+ NPVWN++  ++ +   T  L   V+DK +   DK++G V   L  L A+
Sbjct:  279 IPVSVADIFFQVFVRFRFQLMTTLPLVETINIQLLEVPE--VDFISRLLGNSVFNWEILAIPGLMRLIQKMAFKYLSPVLLPPFSLQL---NIPQLLSKTGL-PIGVLEIKVKNAHGLRKLVGMIKKTVDPYLTFELSGKIVGKTKVFKNSANPVWNESIYILLQ-SFTDPLTIAVYDKRETLSDKKMGTVIFNLNKLHAN 472          
The following BLAST results are available for this feature:
BLAST of CX077921 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
TCB3_YEAST1.221e-1330.39Tricalbin-3 OS=Saccharomyces cerevisiae GN=TCB3 PE... [more]
ESYT3_XENTR2.720e-1327.75Extended synaptotagmin-3 OS=Xenopus tropicalis GN=... [more]
TCB2_YEAST9.673e-1127.86Tricalbin-2 OS=Saccharomyces cerevisiae GN=TCB2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5G12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5G12-M23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077921 ID=CX077921; Name=CX077921; organism=Citrus sinensis; type=EST; length=757bp
TCAATACCCATCCAATTGAAAGATCTTCAAGTTTTTACTGTTATACGTGT
TATCTTCCAACTTGCTGAAGAGATACCCTGCATTTCTGCTGTTGTTGTTG
CTCTACTTTCTGAGCCAAAGCCAAGAATTGACTATACACTGAAGGCTGTT
GGTGGAAGCTTGACAGCCATTCCTGGAATTGCAGATATGATCGATGATAC
TGTGGATTCAATCATCACAGACATGCTTCAGTGGCCTCATAGAATTGTTG
TTCCGATTGGCGGTATACCTGTGGATACTAGTGAATTAGAGCTTAAACCT
CAGGGGAAGGTTGCAGTGACCATAGTGAAAGCGAATAATTTGAAGAACAT
GGAAATGATTGGGAAATCTGATCCATATGCTGTTGTGCATATCAAGCCGC
TATTCAAGGTTAAAACGAATGTCGTAGACAACAACCTGAATCCTGTTTGG
AATCAAACATTTGAGTTGATTGCAGAAGACAAAGAGACTCAGTCACTTAT
CTTTGAGGTTTTTGATAAGGACATTGGGCAAGATAAGAGATTGGGAATAG
TGAAACTGCCCTTGATTGATCTCGAAGCAGATACTCCAAAAGAGGCTGAA
TTGAGACTCCTACCGTCACTTGATATGCTGAAAATAAAAGATAAGAAGGA
CAGAGGAAGCATTACTGTATAGGTACTATATCATGAATTTAACAAGGAGG
AGCAGTTGTCTGCTCTAGAGGAAGAGAAGAGGTTCCTAGAAGAAAGGAAG
AAACTGA
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