CX077897

Overview
NameCX077897
Unique NameCX077897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.655e-45
Identity = 94/115 (81.74%), Postives = 96/115 (83.48%), Query Frame = -2
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG N+SIPYIFVP L EINK             TLAKTY FLFI I TRWTLPRLR+DQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNISIPYIFVPELFEINKVGRVFGTTIGIFITLAKTYFFLFISITTRWTLPRLRIDQLLNLGWKFLLPI 347          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_VITVI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Vitis vinifera GN=ndhI PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYGQQT+RAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_NANDO (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Nandina domestica GN=ndhI PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.468e-45
Identity = 85/89 (95.51%), Postives = 86/89 (96.63%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYGQQT+RAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_MORIN (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Morus indica GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 4.529e-45
Identity = 93/115 (80.87%), Postives = 96/115 (83.48%), Query Frame = -2
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEEL+AGYQTEYSGIKFGLFYVASYLNLLVSSLFVT+LYLGG N+SIPYIFV    EINK             TLAKTYLFLFIPI TRWTLPRLRMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELIAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTILYLGGWNISIPYIFVFDFFEINKTYGVFEPTIGMFITLAKTYLFLFIPITTRWTLPRLRMDQLLNLGWKFLLPI 347          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_CALFG (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Calycanthus floridus var. glaucus GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.916e-45
Identity = 92/115 (80.00%), Postives = 96/115 (83.48%), Query Frame = -2
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG NL IPYIF+P    INK D           TLAK+YLFLF+PI TRWTLPR+RMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGWNLPIPYIFIPEPFGINKTDGVFGTTIDILITLAKSYLFLFVPIITRWTLPRMRMDQLLNLGWKFLLPI 347          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_GOSHI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium hirsutum GN=ndhI PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYG QT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI
Sbjct:    1 MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 89          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_GOSBA (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Gossypium barbadense GN=ndhI PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.726e-45
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYG QT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI
Sbjct:    1 MFPMVTGFMNYGHQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 89          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NU1C_LIRTU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Liriodendron tulipifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.009e-44
Identity = 93/115 (80.87%), Postives = 95/115 (82.61%), Query Frame = -2
Query:  407 LPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIPYIFVPGLVEINKADXXXXXXXXXXXTLAKTYLFLFIPIATRWTLPRLRMDQLLNLGWKFLLPI 751
            LPEAEEELVAGYQTEYSGIK GLFYVASYLNLLVSSLFVTVLYLGG NLSIPYIF+P L  INK             TLAK YLFLFIPI TRWTLPR+RMDQLLNLGWKFLLPI
Sbjct:  233 LPEAEEELVAGYQTEYSGIKSGLFYVASYLNLLVSSLFVTVLYLGGWNLSIPYIFIPELFGINKTGGVFGTTIGIFITLAKAYLFLFIPITTRWTLPRMRMDQLLNLGWKFLLPI 347          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_SPIOL (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Spinacia oleracea GN=ndhI PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGF+NYGQQTIRAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVR CPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTGFINYGQQTIRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDI 89          
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_ACOCL (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Acorus calamus GN=ndhI PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.248e-44
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = -3
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVTGFMNYGQQT+RAARYIGQSFMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDW+ +TD+
Sbjct:    1 MFPMVTGFMNYGQQTVRAARYIGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRLDTDV 89          
The following BLAST results are available for this feature:
BLAST of CX077897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_EUCGG2.655e-4581.74NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NDHI_VITVI3.468e-4595.51NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_NANDO3.468e-4595.51NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NU1C_MORIN4.529e-4580.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CALFG5.916e-4580.00NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NDHI_GOSHI7.726e-4594.38NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_GOSBA7.726e-4594.38NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NU1C_LIRTU1.009e-4480.87NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NDHI_SPIOL2.248e-4494.38NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_ACOCL2.248e-4492.13NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F11-K21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077897 ID=CX077897; Name=CX077897; organism=Citrus sinensis; type=EST; length=752bp
AATATCTGTTTCAAATTTCCAATCAACAACAGGCAGATCTATAGGACATA
CCCGAACGCATACTTCACAAGCAATACATTTATCAAATTCAAAATGGATT
CGACCACGAAAACGCTCTGATGGGATTAATTTTTCATAAGGATATTGAAT
AGTTACAGGTAAACGATTTGCTTGGGATAAAGTAATCATGAAACTTTGAC
CAATGTACCTTGCAGCTCGTATTGTTTGTTGACCATAATTCATGAAACCG
GTTACCATAGGGAACATATTGTGAATATCTATGAATGTTTTGAGTTTATT
TCTTTCTCTTGTTTGAGACAAGTAGCGAATATTGTATTCCTTTTTTTCTT
TATCTTTATAGCGAAAGGAGTTGGGAAGAAGTTGTTAATAATAGATTACC
GAGAGAAATAGGTAAAAGAAATTTCCAGCCAAGATTTAATAGTTGGTCCA
TTCTTAGTCTCGGTAAAGTCCACCTTGTTGCAATAGGAATGAACAAGAAC
AAATAAGTTTTAGCTAATGTAATAAAGATACCAATTGTCGTTCCAAAGAT
TCCATCCGCTTTATTTATTTCAACCAGCCCAGGAACAAATATGTATGGAA
TGGAAAGATTCGAACCTCCCAAGTAAAGAACTGTTACAAATAATGAGGAA
ACTAGTAGATTTAGATAGGAAGCAACGTAAAATAAACCAAATTTTATTCC
TGAATATTCGGTTTGATAACCGGCTACTAATTCTTCTTCCGCTTCTGGTA
AA
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