CX077897

Overview
NameCX077897
Unique NameCX077897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length752
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_SMAMI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Smallanthus microcephalus GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_SILPE (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Silphium perfoliatum GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_RUMPE (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rumfordia penninervis GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_RUDHI (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rudbeckia hirta GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_ROJSU (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Rojasianthe superba GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_RATCO (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Ratibida columnifera GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_PSIGN (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Psilostrophe gnaphalodes GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_PSEAR (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Pseudoclappia arenaria GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_PSAAN (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Psathyrotes annua GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
[Close]
BLAST of CX077897 vs. ExPASy Swiss-Prot
Match: NDHI_POLCN (NAD(P)H-quinone oxidoreductase subunit I, chloroplastic OS=Polymnia canadensis GN=ndhI PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 8.542e-44
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = -3 
Query:    1 MFPMVTGFMNYGQQTIRAARYIGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKFETDI 267
            MFPMVT FMNYGQQT+RAARYIGQ FMITLS ANRLPVTIQYPYEKLI SERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWK ETDI
Sbjct:    1 MFPMVTEFMNYGQQTVRAARYIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDI 89
The following BLAST results are available for this feature:
BLAST of CX077897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDHI_SMAMI8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_SILPE8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_RUMPE8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_RUDHI8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_ROJSU8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_RATCO8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_PSIGN8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_PSEAR8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_PSAAN8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]
NDHI_POLCN8.542e-4493.26NAD(P)H-quinone oxidoreductase subunit I, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F11-K21-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077897 ID=CX077897; Name=CX077897; organism=Citrus sinensis; type=EST; length=752bp
AATATCTGTTTCAAATTTCCAATCAACAACAGGCAGATCTATAGGACATA
CCCGAACGCATACTTCACAAGCAATACATTTATCAAATTCAAAATGGATT
CGACCACGAAAACGCTCTGATGGGATTAATTTTTCATAAGGATATTGAAT
AGTTACAGGTAAACGATTTGCTTGGGATAAAGTAATCATGAAACTTTGAC
CAATGTACCTTGCAGCTCGTATTGTTTGTTGACCATAATTCATGAAACCG
GTTACCATAGGGAACATATTGTGAATATCTATGAATGTTTTGAGTTTATT
TCTTTCTCTTGTTTGAGACAAGTAGCGAATATTGTATTCCTTTTTTTCTT
TATCTTTATAGCGAAAGGAGTTGGGAAGAAGTTGTTAATAATAGATTACC
GAGAGAAATAGGTAAAAGAAATTTCCAGCCAAGATTTAATAGTTGGTCCA
TTCTTAGTCTCGGTAAAGTCCACCTTGTTGCAATAGGAATGAACAAGAAC
AAATAAGTTTTAGCTAATGTAATAAAGATACCAATTGTCGTTCCAAAGAT
TCCATCCGCTTTATTTATTTCAACCAGCCCAGGAACAAATATGTATGGAA
TGGAAAGATTCGAACCTCCCAAGTAAAGAACTGTTACAAATAATGAGGAA
ACTAGTAGATTTAGATAGGAAGCAACGTAAAATAAACCAAATTTTATTCC
TGAATATTCGGTTTGATAACCGGCTACTAATTCTTCTTCCGCTTCTGGTA
AA
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