CX077887

Overview
NameCX077887
Unique NameCX077887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_ASPNC (ATP-dependent RNA helicase dhh1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.049e-36
Identity = 93/236 (39.41%), Postives = 136/236 (57.63%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++      +  AL+L  TRELA Q  H  +    +L  I V V  GG  +    D+++ N+   I+VGTPGR+L LA      L     F++DE DK+L S +    ++++    P D+QVM+FSAT    ++    K M++P EI + DE  LTL G+ Q+Y  + E +K   LN L
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGKHL-GINVMVTTGGTGLM--DDIIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSATFPLIVKSFKDKHMRNPYEINLMDE--LTLRGITQYYAFVEEKQKVHCLNTL 278          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_COCIM (ATP-dependent RNA helicase DHH1 OS=Coccidioides immitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.369e-36
Identity = 93/236 (39.41%), Postives = 137/236 (58.05%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++T     +  AL+L  TRELA Q     +    +L  I V V  GG  ++   D+++ ++   I+VGTPGRIL LA      L     F++DE DK+L S +    ++++    P D+QVM+FSAT    ++    K M++P EI + DE  LTL G+ Q+Y  + E +K   LN L
Sbjct:   49 FEDFYIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERTNPKISKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVTTGGTGLQ--DDIIRLSDTVHIIVGTPGRILDLASKGVADLSECTTFVMDEADKLL-SPEFTPVIEQLLSFHPKDRQVMLFSATFPMIVKSFKDKHMRNPYEINLMDE--LTLRGITQYYAFVEERQKVHCLNTL 278          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 96/233 (41.20%), Postives = 137/233 (58.80%), Query Frame = 3
Query:   72 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLD 767
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ + N     AL+L  TRELA QI         ++ +I+     GG N++     L+ E PQ+VVGTPGR+  + + + L   N++ FILDE D+ML S      + +IF++ P   QV++ SAT+ +++  V  KFM+DP+ I V  + +LTL G+ Q YI + + E K   L+DL +
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVREDMKALQ-EGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQ-ELTLEGIKQFYIAVEKEEWKLDTLSDLYE 260          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: FAL1_VANPO (ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=FAL1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 97/242 (40.08%), Postives = 140/242 (57.85%), Query Frame = 3
Query:   48 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKML-ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELE-KNRKLNDLLD 767
            S  F    LK +LLR I   GFE PS +Q   I Q I G DVI QA+SG GKTA F +  LQ  +L    + ALVL  TRELA QI         Y+ +++     GG  +K   + ++    Q+V GTPGR+L + +   L+ +NV+  ILDE D++L ESL  ++ + +IF   P   QV++ SAT+SK+I  V KKFM DP++I V  + +++L G+ Q+Y+ + + + K   L DL D
Sbjct:   22 SPTFESMNLKDDLLRGIYGYGFEAPSAIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQINQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRNVQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILEVTKKFMSDPVKILVKRD-EISLEGIKQYYVNVEKEDWKFDTLCDLYD 261          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_PHANO (ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum GN=DHH1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 95/238 (39.92%), Postives = 135/238 (56.72%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLD 767
            F DF +K EL+  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++      +  AL+L  TRELA Q     +    +L  I V V  GG  +K   D+++   P  I+VGTPGRIL LA      L   + F++DE DK+L S +    V+++    P D+QVM+FSAT    ++    K M  P EI + DE  LTL G+ Q+Y  + E +K   LN L +
Sbjct:   51 FEDFFIKRELMMGIFEAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKTLGKHL-GINVMVSTGGTGLK--DDIIRLSDPVHIIVGTPGRILDLAGKGVADLSTCQTFVMDEADKLL-SPEFTPVVEQLLGFHPKDRQVMLFSATFPIVVKTFKDKHMNSPYEINLMDE--LTLRGITQYYAFVEEKQKVHCLNTLFN 282          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_GIBZE (ATP-dependent RNA helicase DHH1 OS=Gibberella zeae GN=DHH1 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 94/236 (39.83%), Postives = 136/236 (57.63%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+ TL++      ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+++ + P  IVVGTPGRIL LA      L     FI+DE DK+L S++    ++++ +  P D+QVM+FSAT    ++    K M  P EI + DE  LTL G+ Q+Y  + E +K   LN L
Sbjct:   44 FENFALKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTGLR--DDIIRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL-SIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDKNMVSPYEINLMDE--LTLRGITQYYAFVEEKQKVHCLNTL 273          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_CRYNV (ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var. grubii GN=VAD1 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.789e-36
Identity = 90/238 (37.82%), Postives = 136/238 (57.14%), Query Frame = 3
Query:   51 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            S F DF L+ ELL  I  +GFE PS +Q + IP A+ G D++ +AK+G GKTA F++ TL +   +   + AL+L  TRELA Q     +    ++P+++V +  GG  ++   D+L+ + P  I+VGTPGRIL L       L     F++DE DK+L S D    +++   + P ++QVM+FSAT    ++    + M  P EI + DE  LTL G+ Q+Y  + E +K   LN L
Sbjct:   36 SRFEDFGLRRELLMGIYTAGFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTRELALQTSQVCKTLGAHIPNLQVMITTGGTTLR--DDILRLQQPVHILVGTPGRILDLGSKGIAGLNKCGIFVMDEADKLL-SEDFMPVIEQTLALCPQERQVMLFSATFPWTVKEFKDQHMVQPYEINLMDE--LTLKGVTQYYAYVEESQKVHCLNTL 268          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_PICST (ATP-dependent RNA helicase DHH1 OS=Pichia stipitis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 3.051e-36
Identity = 93/236 (39.41%), Postives = 137/236 (58.05%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            F DF LK ELL  I ++GFE PS +Q E IP A+ G DV+ +AK+G GKTA F++ +LQQ +    ++ AL+L  TRELA Q          +L  I+  V  GG ++K   D+L+ N+   ++VGTPGR+L LA      L     F++DE DKML S + +  +++I +  P ++Q ++FSAT    ++    K +  P EI + DE  LTL G+ Q+Y  + E +K   LN L
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDVLARAKNGTGKTASFIIPSLQQIKPKLNKIQALILVPTRELALQTSQVVRTLGKHL-GIQCMVTTGGTSLK--DDILRLNDPVHVLVGTPGRVLDLAARSVADLSECPLFVMDEADKML-SREFKGIIEQILEFFPKNRQSLLFSATFPLAVKSFMDKHLNKPYEINLMDE--LTLRGITQYYAFVEEKQKLHCLNTL 261          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36
Identity = 91/238 (38.24%), Postives = 134/238 (56.30%), Query Frame = 3
Query:   51 SGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLK-NECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            + F DF LK ELL  I ++GFE PS +Q E IP AI G D++ +AK+G GKTA FV+ TL++ +    ++ AL++  TRELA Q          +   +   V  GG N++   D+L+ NE   ++VGTPGR+L LA  K   L     F++DE DKML S D +  ++++    P   Q ++FSAT    ++    K +  P EI + +E  LTL G+ Q+Y  + E +K   LN L
Sbjct:   31 NSFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKIKPKLNKIQALIMVPTRELALQTSQVIRTLGRHC-GVSCMVTTGGTNLR--DDILRLNETVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKML-SRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTL 262          
BLAST of CX077887 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.985e-36
Identity = 94/236 (39.83%), Postives = 133/236 (56.36%), Query Frame = 3
Query:   57 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTELNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDL 761
            F DF +K ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GKTA FV+  L++      +V  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P  I+VGTPGRIL LA      L     F++DE DK+L S +    ++++ +  P D+Q+M+FSAT    ++    K M DP EI + DE  LTL G+ Q Y  + E EK   LN L
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHL-GINVMVTTGGTTLR--DDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLL-SPEFTIVIEQLLQFHPKDRQIMLFSATFPMTVKDFSDKNMADPYEINLMDE--LTLRGITQFYAFVEEKEKVHCLNTL 278          
The following BLAST results are available for this feature:
BLAST of CX077887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_ASPNC1.049e-3639.41ATP-dependent RNA helicase dhh1 OS=Aspergillus nig... [more]
DHH1_COCIM1.369e-3639.41ATP-dependent RNA helicase DHH1 OS=Coccidioides im... [more]
IF4A_ASPFU1.789e-3641.20ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
FAL1_VANPO1.789e-3640.08ATP-dependent RNA helicase FAL1 OS=Vanderwaltozyma... [more]
DHH1_PHANO1.789e-3639.92ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria n... [more]
DHH1_GIBZE1.789e-3639.83ATP-dependent RNA helicase DHH1 OS=Gibberella zeae... [more]
DHH1_CRYNV1.789e-3637.82ATP-dependent RNA helicase VAD1 OS=Cryptococcus ne... [more]
DHH1_PICST3.051e-3639.41ATP-dependent RNA helicase DHH1 OS=Pichia stipitis... [more]
DHH1_CANGA3.985e-3638.24ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
DHH1_BOTFB3.985e-3639.83ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F04-K7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077887 ID=CX077887; Name=CX077887; organism=Citrus sinensis; type=EST; length=769bp
CCAAAGCAAACGGCGAAGCCGCCAAGAAGGGCTATGTTGGTATACACAGT
TCAGGATTCAGAGACTTTCTTTTGAAGCCGGAACTTCTTCGTGCAATTGT
GGACTCAGGATTTGAGCATCCTTCAGAAGTGCAACATGAATGCATACCTC
AAGCGATTCTGGGCATGGATGTTATTTGCCAAGCTAAATCAGGGATGGGG
AAGACTGCTGTGTTTGTTCTGTCAACTCTTCAGCAAACAGAGCTAAATCC
AGGCCAAGTTACTGCACTTGTTTTATGTCACACTAGAGAGTTAGCTTATC
AGATCTGCCATGAGTTTGAGAGGTTCAGTACTTACCTGCCTGATATCAAG
GTTGCTGTCTTTTATGGTGGAGTTAATATAAAAATTCACAAAGATTTGCT
GAAAAACGAATGTCCCCAAATTGTTGTCGGGACTCCTGGAAGGATACTAG
CTCTTGCTAGAGATAAAGACCTCTCTTTGAAGAATGTGAGGCATTTTATC
CTTGATGAATGCGATAAGATGCTGGAATCTCTTGACATGAGAAGAGATGT
GCAAGAGATTTTCAAGATGACTCCTCATGACAAGCAAGTAATGATGTTTT
CAGCAACACTCAGCAAGGAAATCCGCCCAGTCTGCAAGAAATTTATGCAA
GATCCAATGGAAATTTATGTGGATGACGAGGCAAAGTTGACTCTTCATGG
TCTTGTACAGCACTACATCAAATTGAGTGAGCTGGAGAAAAATCGGAAGT
TGAATGATCTCCTTGATGC
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