CX077886

Overview
NameCX077886
Unique NameCX077886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_CANGA (ATP-dependent RNA helicase SUB2 OS=Candida glabrata GN=SUB2 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.469e-52
Identity = 102/158 (64.56%), Postives = 124/158 (78.48%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            KL E EKNRKL  LLD L+FNQV+IFVKS SRA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVS+  D ++L+++Q RF+V I E PE+ ID STY+
Sbjct:  280 KLEEREKNRKLAQLLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFGTKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 437          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB21_VANPO (ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=SUB2-1 PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 8.469e-52
Identity = 103/158 (65.19%), Postives = 121/158 (76.58%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            KL E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL E NFP+I +H  M Q ER+ RYK FKE  KRI V+TD+ GRGIDIER+N+ INYD+   AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  282 KLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGHMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 439          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_YEAST (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae GN=SUB2 PE=1 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.106e-51
Identity = 102/158 (64.56%), Postives = 123/158 (77.85%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            KL E EKNRKL  LLD L+FNQV+IFVKS +RA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  287 KLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_YEAS7 (ATP-dependent RNA helicase SUB2 OS=Saccharomyces cerevisiae (strain YJM789) GN=SUB2 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.106e-51
Identity = 102/158 (64.56%), Postives = 123/158 (77.85%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            KL E EKNRKL  LLD L+FNQV+IFVKS +RA EL KLL   NFP+I +H  M QEER+ RYK FK+  KRI V+TD+ GRGIDIER+N+ INYD+ + AD YLHRVGRAGRFGTKGLAI+FVSS  D ++L ++Q RF+V I E PE+ ID STY+
Sbjct:  287 KLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_ASHGO (ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii GN=SUB2 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.445e-51
Identity = 102/158 (64.56%), Postives = 121/158 (76.58%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            +L E EKNRKL  LLD L+FNQV+IFVKS  RA EL KLL   NFP+I +H  M QEER+ RYK FKE  KRI V+TD+ GRGIDIER+N+ INYDMP  AD YLHRVGRAGRFGTKGLAI+ VSS  D ++L ++Q RF+V I E PE+ +D STY+
Sbjct:  279 RLEEREKNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMRQEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGTKGLAISLVSSKDDEEVLAKIQERFDVKITEFPEEGVDPSTYL 436          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_YARLI (ATP-dependent RNA helicase SUB2 OS=Yarrowia lipolytica GN=SUB2 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 3.012e-49
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = -3
Query:  408 LSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELP-EQIDTSTYMPS 881
            + E  KNRKL DLLD L+FNQV+IFVKS SRA  L+++L    FP   +HSG+ QEER+ RYK FKE  KRI V+TD+ GRGIDIER+N+ INYD+P  AD YLHRVGRAGRFGTKGLAI+FVS+  D ++L ++Q RFEV+I   P E +D STYM S
Sbjct:  283 VEEKSKNRKLGDLLDNLEFNQVIIFVKSTSRANGLSQVLNANGFPCTAVHSGIPQEERIARYKEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGRFGTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYMNS 441          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.931e-28
Identity = 61/141 (43.26%), Postives = 93/141 (65.96%), Query Frame = -3
Query:  432 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 854
            L DL D++   Q VIF  +  +  EL + L E NF    I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  I
Sbjct:  252 LTDLYDSISVTQAVIFCNTRRKVEELTERLRENNFTVSAIYSDLQQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPSNKENYIHRIGRGGRFGRKGIAINFVTN-KDIGAMRELERFYSTQIEELPSSI 391          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: IF4A_VANPO (ATP-dependent RNA helicase eIF4A OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=TIF1 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 6.530e-28
Identity = 59/141 (41.84%), Postives = 93/141 (65.96%), Query Frame = -3
Query:  432 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQI 854
            L+DL D++   Q VIF  +  +  EL + L E NF    I+S + Q+ER    K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI FV++  D   + +++  +   I+ELP  +
Sbjct:  252 LSDLYDSISVTQAVIFCNTRRKVEELTQKLTESNFTVSSIYSDLPQQERDVIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFVTN-EDVGAMREIEKFYSTQIEELPADV 391          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.528e-28
Identity = 61/143 (42.66%), Postives = 92/143 (64.34%), Query Frame = -3
Query:  426 LNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDT 854
            L DL D++   Q VIF  +  +  EL + L   NF    I+S + Q+ER T  K F+ G+ RIL++TDL+ RGID+++V++VINYD+P + + Y+HR+GR GRFG KG+AI F+ +  D   L +++  +   I+ELP  I T
Sbjct:  252 LTDLYDSISVTQAVIFCNTRRKVEELTQRLTADNFTVSSIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIGRGGRFGRKGVAINFIVN-EDVQALRELEQFYSTQIEELPSDIGT 393          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.241e-27
Identity = 65/156 (41.67%), Postives = 92/156 (58.97%), Query Frame = -3
Query:  414 LSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 881
            + E +K   LN L   L  NQ +IF  S +R   L K + E  F     H+ M Q ER   +  F++G  R LV +DL+ RGIDI+ VN+VIN+D P +A+TYLHR+GR+GRFG  GLAI  + + +D   L +++     +I  +P QID S Y+
Sbjct:  255 VEEKQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITELGFSCYYSHARMKQSERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLI-NWNDRFNLYKIEQELNTEIAPIPSQIDKSLYV 409          
The following BLAST results are available for this feature:
BLAST of CX077886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUB2_CANGA8.469e-5264.56ATP-dependent RNA helicase SUB2 OS=Candida glabrat... [more]
SUB21_VANPO8.469e-5265.19ATP-dependent RNA helicase SUB2-1 OS=Vanderwaltozy... [more]
SUB2_YEAST1.106e-5164.56ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_YEAS71.106e-5164.56ATP-dependent RNA helicase SUB2 OS=Saccharomyces c... [more]
SUB2_ASHGO1.445e-5164.56ATP-dependent RNA helicase SUB2 OS=Ashbya gossypii... [more]
SUB2_YARLI3.012e-4962.26ATP-dependent RNA helicase SUB2 OS=Yarrowia lipoly... [more]
IF4A_KLULA2.931e-2843.26ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]
IF4A_VANPO6.530e-2841.84ATP-dependent RNA helicase eIF4A OS=Vanderwaltozym... [more]
IF4A_CANGA8.528e-2842.66ATP-dependent RNA helicase eIF4A OS=Candida glabra... [more]
DHH1_KLULA3.241e-2741.67ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F04-K7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077886 ID=CX077886; Name=CX077886; organism=Citrus sinensis; type=EST; length=886bp
CTTTTTTTTTAGTACTAAAATAGCTACAACATTAGGCACTTAGAAGCCAA
TTTTGAAAAAATAAAAATAAAAACAATGTAGCGACCAGAGTTGGTGTCTA
AGAATCTAATCGATTAACAGTGCAATAAAAATTATCTCACAAGGAACTCT
AATACAAGCCAAGGTACCAGTTGAATAACATTCCCAATAGCAGCAGTACC
CAGAAGGTATTAAAAGGCTACAAATCCCAAAAACAAGAAAAGGCAGCGTA
AAACCACAAAATAGAGGGATCCATCTGACAAATCTCCAAGGCAACATATA
TGAAAGCCATTGGACTTCATCTAAAGAAACAAATACATAAAGGGCCTTCA
GCACCCTGCTTCCACATGCGCCTCAAATTTTCCACATCAGAGAACAGATC
TCCACTATGATGGCATGTATGTAGATGTATCAATCTGCTCAGGAAGCTCC
TTTATATCTACTTCAAACCTTGCCTGAACCTGATTGAGAATATCGGAGTC
TGAAGCAGATGATACAAAAGTAATTGCAAGGCCCTTGGTGCCAAACCTAC
CAGCTCTACCAACCCTGTGCAGATAAGTATCAGCAGAATCTGGCATGTCA
TAATTGATGACAATGTTGACACGCTCAATGTCAATTCCCCTACCAACCAA
ATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCCTTGAAACCTTTGTAAC
GCGTCAACCTTTCTTCTTGGGACATGCCAGAATGGATGCATATAGAAGGA
AAATTGCATTCTACAAGTAACTTGTTTAACTCCGCTGCTCGGCTAACACT
TTTGACAAAGATAACAACTTGATTAAAGTCCAATGCATCAAGGAGATCAT
TCAACTTCCGATTTTTCTCCAGCTCACTCAATTTGA
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