CX077884

Overview
NameCX077884
Unique NameCX077884
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length850
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: SCRIB_HUMAN (Protein scribble homolog OS=Homo sapiens GN=SCRIB PE=1 SV=4)

HSP 1 Score: 71.633 bits (174), Expect = 6.155e-12
Identity = 84/272 (30.88%), Postives = 127/272 (46.69%), Query Frame = 1
Query:   22 NLVGEIPDSLGRXXXXXXXXXXXXXXXGAIPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRL-PLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNIAGAAXXXXXXXXXXXXXXXXPEEIGFLKSLVVLSGSENKFTGSLPE 834
            N + EIP+S+ +                 +P   T+L S+  + L + SL   LP    NL +L  L+   N L   +P  L+ L  LE L+L  N LE  LP T+   P L EL L RN+L+  LP +LG    L  +D+S N+   E+PA L     L +LL+  N    +LPDG+G  + L+ +++  NRL  +V   +    ++  L LT+N L   + +++ G                  P EIG   +L VLS  +N+     PE
Sbjct:   92 NDIPEIPESI-KFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQA-LPGDVGNLANLVTLELREN-LLKSLPASLSFLVKLEQLDLGGNDLE-VLPDTLGALPNLRELWLDRNQLSA-LPPELGNLRRLVCLDVSENRLE-ELPAELGGLVLLTDLLLSQNLLR-RLPDGIGQLKQLSILKVDQNRLC-EVTEAIGDCENLSELILTENLLMA-LPRSL-GKLTKLTNLNVDRNHLEALPPEIGGCVALSVLSLRDNRLAVLPPE 353          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: Y2267_ARATH (Probable inactive receptor kinase At2g26730 OS=Arabidopsis thaliana GN=At2g26730 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.038e-12
Identity = 52/157 (33.12%), Postives = 72/157 (45.86%), Query Frame = 1
Query:    4 LWLTECNLVGEIPD-SLGRXXXXXXXXXXXXXXXGAIPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRLP-LESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEI 468
            L L    LVG+IP  SLGR               G IPS  + L  +  + L +N  +G+ PT ++ L +L  LD S N+ TG IP  +  L  L  L L  N   G+LP+    S GL +  +  N LNG++P  L +         S   FTG +
Sbjct:   71 LRLPGTGLVGQIPSGSLGRLTELRVLSLRSNRLSGQIPSDFSNLTHLRSLYLQHNEFSGEFPTSFTQLNNLIRLDISSNNFTGSIPFSVNNLTHLTGLFLGNNGFSGNLPSI---SLGLVDFNVSNNNLNGSIPSSLSR--------FSAESFTGNV 216          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: Y1848_ARATH (Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana GN=RKL1 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  310 LEGSLPATI-ADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNI 696
            L G +P  I  +   L  L L  N L+G+LP DL  +S LR + L  N+F+GEIP  L     L  L +  NSFTG++  G  +   L  + L  N+L+G +P L   LP V    +++N L+G I KN+
Sbjct:   84 LSGDIPEGIFGNLTQLRTLSLRLNALSGSLPKDLSTSSNLRHLYLQGNRFSGEIPEVLFSLSHLVRLNLASNSFTGEISSGFTNLTKLKTLFLENNQLSGSIPDL--DLPLVQ-FNVSNNSLNGSIPKNL 210          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: SHOC2_CAEBR (Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 56/167 (33.53%), Postives = 92/167 (55.09%), Query Frame = 1
Query:  106 AIPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRL-PLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLT 603
            +IPS + EL  + ++ LY N LT  LPT    L +L+ L  S N L+  +PD L+ L  LE+L+L  N+L   +PA I     L  L L  NR+   +   +G    L+ +D+  N+   E+P+++ +   L   L+ YN  T ++P+ +G C +LT++ L +N L+
Sbjct:   87 SIPSPIKELTQLTELFLYKNKLT-CLPTEIGQLVNLKKLGLSENALSS-LPDSLSSLESLETLDLRHNKLT-EVPAVIYKITSLETLWLRYNRI-VAVDEQIGNLQKLKMLDVRENKIR-ELPSAIGKLSSLVVCLVSYNHLT-RVPEEIGECHALTQLDLQHNDLS 247          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 41/115 (35.65%), Postives = 72/115 (62.61%), Query Frame = 1
Query:  136 SVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRL-PLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPAS 477
            SV +++L + +L+G+L    + L +L+ L+   N++TG IP++L  L  L SL+L+ N + G +P+++     L  LRL+ N L+G +P  L    PL  +D+SNN+ +G+IP +
Sbjct:   71 SVTRLDLGSANLSGELVPQLAQLPNLQYLELFNNNITGEIPEELGDLMELVSLDLFANNISGPIPSSLGKLGKLRFLRLYNNSLSGEIPRSL-TALPLDVLDISNNRLSGDIPVN 184          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: SCRIB_DANRE (Protein scribble homolog OS=Danio rerio GN=scrib PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 77/247 (31.17%), Postives = 119/247 (48.18%), Query Frame = 1
Query:  109 IPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRL-PLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNIAGAAXXXXXXXXXXXXXXXXPEEIGFLKSLVVLSGSENKFTGSLPESLTN 846
            +P   T+L  +  + L + SL   LP    NL++L  L+   N L   +P  L+ L  LE L+L  N LE  LP T+   P L EL L RN+L+ +LP +LG    L  +D+S N+ + E+P  +     L +LL+  N     LPD +G  + L+ +++  NRL   +   +    ++  L LT+N L   + +++ G                  P E+G   SL VLS  +N+  G LP  L N
Sbjct:  120 LPDGFTQLRGLAHLSLNDVSLQS-LPNDIGNLSNLVTLELREN-LLKSLPSSLSFLVKLEQLDLGSNVLE-VLPDTLGALPNLRELWLDRNQLS-SLPPELGNLRQLVCLDVSENRLS-ELPTEISGLIALTDLLLSENLLE-ILPDSIGSLKKLSILKVNQNRLV-HLTDSIGECENLTELMLTENLLQ-SLPRSL-GKLKKLTNLNVDRNRLSSVPAELGGCVSLNVLSLRDNRL-GKLPPELAN 356          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: LAP4_DROME (Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 85/270 (31.48%), Postives = 124/270 (45.93%), Query Frame = 1
Query:  109 IPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRLP-LESLNLYENRLEGSLPATIAD-----------------------SPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNIAGAAXXXXXXXXXXXXXXXXPEEIGFLKSLVVLSGSENKFTGSLPESLTN 846
            IP  +  L S+ Q+  ++++    LP+G+S L +L +L  +   LT  +P D   L  LESL L EN L+  LP TI+                         PGL+EL L  N+L   LP +LG  + L ++D+S N+   E+P  +     L +L +  N     LPDG+     LT ++L  NRL  ++   L    ++  L LT+NFLS E+  +I G                  P EIG   +L VLS  +NK    LP  L N
Sbjct:   98 IPDDIKHLQSL-QVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLT-TLPADFGSLTQLESLELRENLLK-HLPETISQLTKLKRLDLGDNEIEDLPPYLGYLPGLHELWLDHNQLQ-RLPPELGLLTKLTYLDVSENRLE-ELPNEISGLVSLTDLDLAQNLLEA-LPDGIAKLSRLTILKLDQNRLQ-RLNDTLGNCENMQELILTENFLS-ELPASI-GQMTKLNNLNVDRNALEYLPLEIGQCANLGVLSLRDNKLK-KLPPELGN 357          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: SCRIB_MOUSE (Protein scribble homolog OS=Mus musculus GN=Scrib PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 82/272 (30.15%), Postives = 124/272 (45.59%), Query Frame = 1
Query:   22 NLVGEIPDSLGRXXXXXXXXXXXXXXXGAIPSSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRL-PLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASLCEKGELEELLMIYNSFTGQLPDGLGHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNIAGAAXXXXXXXXXXXXXXXXPEEIGFLKSLVVLSGSENKFTGSLPE 834
            N + EIP+S+ +                 +P   T+L S+  + L + SL   LP    NL +L  L+   N L   +P  L+ L  LE L+L  N LE  LP T+   P L EL L RN+L+  LP +LG    L  +D+S N+   E+P  L     L +LL+  N    +LP+G+G  + L+ +++  NRL  +V   +    ++  L LT+N L+     +  G                  P EIG   +L VLS  +N+     PE
Sbjct:   92 NDIPEIPESI-KFCKALEIADFSGNPLSRLPDGFTQLRSLAHLALNDVSLQA-LPGDVGNLANLVTLELREN-LLKSLPASLSFLVKLEQLDLGGNDLE-VLPDTLGALPNLRELWLDRNQLSA-LPPELGNLRRLVCLDVSENRLE-ELPVELGGLALLTDLLLSQNLLQ-RLPEGIGQLKQLSILKVDQNRLC-EVTEAIGDCENLSELILTENLLTA--LPHSLGKLTKLTNLNVDRNHLEVLPPEIGGCVALSVLSLRDNRLAVLPPE 353          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: Y3288_ARATH (Probable inactive receptor kinase At3g02880 OS=Arabidopsis thaliana GN=At3g02880 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.791e-11
Identity = 46/128 (35.94%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  103 GAIP-SSLTELASVVQIELYNNSLTGDLPTGWSNLTSLRLLDASMNDLTGPIPDDLTRLP-LESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPASL 480
            G++P   +  L  +  + L  NSL+G +P+ +SNL  LR L    N  +G IP  L  LP +  +NL EN+  G +P  +  +  L  L L RN+L+G +P       PL+  ++S+NQ  G IP+SL
Sbjct:   79 GSLPIGGIGNLTQLKTLSLRFNSLSGPIPSDFSNLVLLRYLYLQGNAFSGEIPSLLFTLPSIIRINLGENKFSGRIPDNVNSATRLVTLYLERNQLSGPIP---EITLPLQQFNVSSNQLNGSIPSSL 203          
BLAST of CX077884 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.791e-11
Identity = 75/254 (29.53%), Postives = 112/254 (44.09%), Query Frame = 1
Query:  103 GAIPSSLTELASVVQIELYNNSLTGDLPTG----WSNLTSLRLLDASMNDLTGPIPDDLTRLPLESLNLYENRLEGSLPATIADSPGLYELRLFRNRLNGTLPGDLGKNSPLRWVDLSNNQFTGEIPAS---LCEKGELEELLMIYNSFTGQLPDGL---GHCQSLTRVRLGYNRLTGKVPPLLWGLPHVYLLELTDNFLSGEISKNIAGAAXXXXXXXXXXXXXXXXPEEIGFLKSLVVLSGSENKFTGSLPE 834
            G I SSL   +  + +  +N+S+      G    +SN + L+  D S    T     + + L L SL L    L GSLP  I +   L  + L  N L+G++P +LG  S L  VDLS N   G +P S   LC+K  L    +  N+ +G LP+       C +L  + LG N+ +G+ P  +     V  L+L+ N   G +                        PE +G L+ L  L+ S N F+G LP+
Sbjct:   38 GKIKSSLQGNSESLLLSSWNSSVPVCQWRGVKWVFSNGSPLQCSDLSSPQWTNTSLFNDSSLHLLSLQLPSANLTGSLPREIGEFSMLQSVFLNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDK--LVSFKIHGNNLSGVLPEPALPNSTCGNLQVLDLGGNKFSGEFPEFITRFKGVKSLDLSSNVFEGLV------------------------PEGLGVLE-LESLNLSHNNFSGMLPD 264          
The following BLAST results are available for this feature:
BLAST of CX077884 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
SCRIB_HUMAN6.155e-1230.88Protein scribble homolog OS=Homo sapiens GN=SCRIB ... [more]
Y2267_ARATH8.038e-1233.12Probable inactive receptor kinase At2g26730 OS=Ara... [more]
Y1848_ARATH1.050e-1137.69Probable inactive receptor kinase At1g48480 OS=Ara... [more]
SHOC2_CAEBR1.050e-1133.53Leucine-rich repeat protein soc-2 OS=Caenorhabditi... [more]
SERK5_ARATH1.050e-1135.65Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SCRIB_DANRE1.050e-1131.17Protein scribble homolog OS=Danio rerio GN=scrib P... [more]
LAP4_DROME1.050e-1131.48Protein lap4 OS=Drosophila melanogaster GN=scrib P... [more]
SCRIB_MOUSE1.371e-1130.15Protein scribble homolog OS=Mus musculus GN=Scrib ... [more]
Y3288_ARATH1.791e-1135.94Probable inactive receptor kinase At3g02880 OS=Ara... [more]
TMKL1_ARATH1.791e-1129.53Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F02-K3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077884 ID=CX077884; Name=CX077884; organism=Citrus sinensis; type=EST; length=850bp
ATACTCTGGCTCACTGAGTGTAACCTGGTCGGTGAGATTCCTGACTCCCT
CGGCAGACTCGCTAAGCTCGTTGATTTGGACCTGGCGCTCAACAACTTAG
TTGGTGCTATCCCGAGTTCACTCACTGAGTTGGCCAGTGTCGTCCAGATT
GAGCTGTATAACAACTCCCTGACTGGGGACTTGCCGACTGGTTGGTCTAA
TTTGACGAGCCTGAGACTCCTCGACGCCTCAATGAACGATTTGACTGGGC
CGATTCCTGACGACTTGACTCGGTTGCCACTCGAGAGTCTCAATCTTTAC
GAAAACCGTTTGGAAGGGAGCTTGCCTGCTACCATTGCTGACTCTCCGGG
TTTGTACGAACTCAGGCTTTTTAGAAACCGCCTTAACGGCACCTTACCCG
GAGATCTTGGTAAAAACTCGCCGTTGAGATGGGTCGACTTGTCGAACAAC
CAGTTTACCGGCGAAATACCGGCGAGTTTATGCGAAAAGGGGGAGCTGGA
GGAGTTGCTGATGATATACAACTCCTTCACGGGTCAACTACCGGATGGCC
TTGGTCATTGCCAGAGCTTGACACGTGTACGGTTGGGGTACAATCGGCTA
ACCGGTAAGGTGCCACCACTTTTATGGGGTCTCCCTCACGTATACTTGCT
TGAGCTTACTGACAACTTTTTGTCCGGAGAAATCTCGAAGAATATTGCCG
GTGCAGCAAATTTATCGCTTTTGATTATTTCCAAGAATAACTTAAGTGGA
TCATTGCCGGAAGAGATTGGTTTCTTGAAAAGTCTTGTTGTGCTCTCTGG
TAGTGAAAATAAGTTCACTGGGTCACTGCCAGAAAGTTTAACAAATCTTG
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