CX077878

Overview
NameCX077878
Unique NameCX077878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.477e-14
Identity = 69/254 (27.17%), Postives = 120/254 (47.24%), Query Frame = 2
Query:   74 DVVAIEALVRKLSSR-----SVEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTDDVMTQ--EHAVTAILNLSIYENNKGLIMLA--GAIPSIVQILRAGSMEARENAAATLFSLSL----LDENKIIIGASGAIPALVDLLQN--GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALL-KMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-ASTIPVLIDLLRTGLPRNKENAAAILLSLC 784
            D  ++ AL+ + S+      SV  R AA+  +R  ++ S  NR++IA   A  +L+ +L ++   ++    ++  ++ L I E N+ + + +  G +  + ++L   S+E R NAAA +  +S      D    I  +      ++DLL+N   S R  K     LF LC     +  A+ AG    L+ ++  D   C  + AL  + +L   PE   A  + A T+P+L+  +     R  E AA  LL+LC
Sbjct:  101 DPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSESLALLVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSISNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALC 354          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 69/258 (26.74%), Postives = 123/258 (47.67%), Query Frame = 2
Query:   74 DVVAIEALVRKLSSR-----SVEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTD--------DVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAA----TLFSLSLLDENKIIIGASGAIPALVDLLQN--GSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALL-KMLTDSRNCMVDEALTILSVLASNPEAKIAIVK-ASTIPVLIDLLRTGLPRNKENAAAILLSLC 784
            D +++ +L+ + S+      SV  R AA+  +R L++ S  NR++IA   A  +LV +L  D        +++++  A+  +L+++  E  + +      +  + ++L   S+E R NAAA     L     +D   II G+      ++DLL+N   S R  K    A+F LC+    +  A+ AG    L+ ++  D   C  +  L  + +L   PE   A  + A T+P+++  +     R  E AA  LL+LC
Sbjct:  100 DPISVRSLLSQASAITGTHVSVRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSSELVSESLALLVLLHMTETEC-EAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISGSDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFDRCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALC 356          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: VAC8_GIBZE (Vacuolar protein 8 OS=Gibberella zeae GN=VAC8 PE=3 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 2.254e-13
Identity = 64/230 (27.83%), Postives = 119/230 (51.74%), Query Frame = 2
Query:   59 RDVSGDVVAIEALVRKLSSRSVEERRAAVAEIRSL---SKRSTDNRIIIAEAGAIPVLVNLLTTDDVMTQEHAVTAILNL--SIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDEN--KIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIDLL 727
            R+V  D   +E ++  L S  +E +RAA A + +L   S R   N+  IA +GA+  L  L  + D+  Q +A  A+LN+  S  + N+  ++ AGAIP +VQ+L +  ++ +      L ++++   N  K+       + +LV+L+ + S + +  AA AL NL      +   VRA  +  LL++L  S   ++  A+  +  ++ +P  +  I++ + +  L+DLL
Sbjct:   82 REVDRDT--LEPILFLLQSPDIEVQRAASAALGNLAVDSTREQKNKAKIARSGALGPLTRLAKSRDMRVQRNATGALLNMTHSEIDENRQQLVNAGAIPVLVQLLSSPDVDVQYYCTTALSNIAVDASNRRKLAQSEPKLVQSLVNLMDSTSPKVQCQAALALRNLASDEKYQLDIVRANGLHPLLRLLQSSYLPLILSAVACIRNISIHPMNESPIIETNFLKPLVDLL 309          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: ANKAR_MOUSE (Ankyrin and armadillo repeat-containing protein OS=Mus musculus GN=Ankar PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 62/218 (28.44%), Postives = 95/218 (43.58%), Query Frame = 2
Query:   89 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAV----RAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIDLLR 730
            E LV  L   S + R  AV  +  +   +      I +AG IP LVNLL +  +  Q   V  + N+S + +    I+ AG IP+++ +L +   E     A  L+ ++   ENK +I     IPAL++LL         +    +  LC  MGN+          GI   +  + +DS       + TI  V   N E + AI K   IP L+ L +
Sbjct:  716 ETLVEMLQCESSKRRMMAVMSLEVICLANDRYWQCILDAGTIPALVNLLKSPQIKLQYKTVGLLSNISTHVSIVHAIVEAGGIPAVINLLTSDEPELHSRCAIILYDVAKC-ENKDVIAKYSGIPALINLLSLNKESVLVNVMNCIRVLC--MGNESNQQSMKDNNGIQYLIQFLSSDSDVLKALSSATIAEVARDNKEVQDAIAKEGAIPPLVTLFK 930          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: ADLO1_ARATH (Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FBX5 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.944e-13
Identity = 65/227 (28.63%), Postives = 108/227 (47.58%), Query Frame = 2
Query:  122 VEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTDDVM-TQEHAVTAILNLSIY----ENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQ---NGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLS 778
            +E    A+A + +  K S +    +A+AG +  LV L         QE A  A+ NL+ +     NN  +   AGA+ ++VQ+ ++     R+ AA  L++LS  D+N+  I  +G + ALV L Q   N ST  ++ AA AL+ L +   N     R G +  L+ +       + + A   L  LA NP   + IV+   +P L+ L  + + +     AA+ L+
Sbjct:  540 LERAAGALANLAADDKCSME----VAKAGGVHALVMLARNCKYEGVQEQAARALANLAAHGDSNNNNAAVGQEAGALEALVQLTKSPHEGVRQEAAGALWNLSFDDKNRESISVAGGVEALVALAQSCSNASTGLQERAAGALWGLSVSEANSVAIGREGGVPPLIALARSEAEDVHETAAGALWNLAFNPGNALRIVEEGGVPALVHLCSSSVSKMARFMAALALA 762          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: ANKAR_HUMAN (Ankyrin and armadillo repeat-containing protein OS=Homo sapiens GN=ANKAR PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.845e-13
Identity = 59/216 (27.31%), Postives = 95/216 (43.98%), Query Frame = 2
Query:   89 EALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVR--AGIISALLKMLTDSRNCMVDEALTILSVLASNPEAKIAIVKASTIPVLIDLLR 730
            + LV  L   S + R  AV  +  +   +      I +AG IP L+NLL +  +  Q   V  + N+S +++    ++ AG IPS++ +L     E     A  L+ ++   ENK +I     IP+L++LL         +    +  LCI   N  RAVR   G+   +  + +DS       +  I  V   N E + AI     IP L+ L +
Sbjct:  703 KTLVEMLQCESYKRRMMAVMSLEVICLANDQYWRCILDAGTIPALINLLKSSKIKLQCKTVGLLSNISTHKSAVHALVEAGGIPSLINLLVCDEPEVHSRCAVILYDIAQC-ENKDVIAKYNGIPSLINLLNLNIENVLVNVMNCIRVLCIGNENNQRAVREHKGLPYLIRFLSSDSDVLKAVSSAAIAEVGRDNKEIQDAIAMEGAIPPLVALFK 917          
BLAST of CX077878 vs. ExPASy Swiss-Prot
Match: VAC8_PICPA (Vacuolar protein 8 OS=Pichia pastoris GN=VAC8 PE=3 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 5.021e-13
Identity = 60/234 (25.64%), Postives = 119/234 (50.85%), Query Frame = 2
Query:   86 IEALVRKLSSRSVEERRAAVAEIRSLSKRSTDNRIIIAEAGAIPVLVNLLTTDDVMTQEHAVTAILNLSIYENNKGLIMLAGAIPSIVQILRAGSMEARENAAATLFSLSLLDENKIIIGASGAIPALVDLLQNGSTRGRKDAATALFNLCIYMGNKGRAVRAGIISALLKMLTDSRNCMVDEALTILSVLA--SNPEAKIAIVKASTIPVLIDLLRTGLPRNKENAAAILLSL 781
            + AL   + S +++ +R+A      ++++  D R +  +    P+L+ LL + D   Q  A  A+ NL++ ++NK LI+  G +  +++ + + ++E + NA   + +L+  D+NK  I  SGA+  L  L ++   R +++A  AL N+   + N+   V AG +  L+++L+ +   +     T LS +A       K+A  +   I  L+ L+ +  PR +  A   L +L
Sbjct:   50 LRALSTLVYSENIDLQRSAALAFAEVTEK--DVRPVTRDV-LEPILI-LLQSSDAEVQRAACAALGNLAVNDSNKVLIVNMGGLEPLIRQMMSPNIEVQCNAVGCITNLATQDQNKSKIATSGALIPLTKLAKSKDLRVQRNATGALLNMTHSLENRQELVNAGSVPILVQLLSSTDPDVQYYCTTALSNIAVDEGNRKKLASTEPKLISQLVQLMDSTSPRVQCQATLALRNL 279          
The following BLAST results are available for this feature:
BLAST of CX077878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
PUB25_ARATH3.477e-1427.17U-box domain-containing protein 25 OS=Arabidopsis ... [more]
PUB26_ARATH5.931e-1426.74U-box domain-containing protein 26 OS=Arabidopsis ... [more]
VAC8_GIBZE2.254e-1327.83Vacuolar protein 8 OS=Gibberella zeae GN=VAC8 PE=3... [more]
ANKAR_MOUSE2.944e-1328.44Ankyrin and armadillo repeat-containing protein OS... [more]
ADLO1_ARATH2.944e-1328.63Protein ARABIDILLO 1 OS=Arabidopsis thaliana GN=FB... [more]
ANKAR_HUMAN3.845e-1327.31Ankyrin and armadillo repeat-containing protein OS... [more]
VAC8_PICPA5.021e-1325.64Vacuolar protein 8 OS=Pichia pastoris GN=VAC8 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5E10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5E10-I19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077878 ID=CX077878; Name=CX077878; organism=Citrus sinensis; type=EST; length=798bp
CATTGAGCAGCCTATAGGACTAGCAAATGGGAAGATAAAGAAGAGCGACG
GTTCTTTCCGTGATGTTAGCGGGGATGTGGTAGCCATTGAGGCACTGGTT
CGCAAACTCTCAAGCCGTTCCGTTGAGGAGCGTAGAGCTGCTGTGGCTGA
AATTAGATCCCTTTCCAAAAGAAGTACTGATAACAGAATTATAATTGCGG
AAGCAGGAGCAATACCTGTTCTGGTTAACCTTTTAACAACAGATGACGTG
ATGACCCAAGAACATGCAGTGACAGCCATTCTTAACCTCTCTATATATGA
AAATAACAAGGGACTCATAATGCTTGCAGGAGCCATTCCTTCTATAGTTC
AAATCCTTAGAGCTGGAAGCATGGAAGCTAGAGAGAATGCAGCAGCAACA
CTCTTTAGCTTGTCACTTCTGGATGAGAACAAAATAATAATTGGTGCATC
TGGTGCAATACCGGCTTTGGTAGATTTACTCCAAAATGGAAGCACCAGAG
GAAGGAAAGACGCAGCAACAGCATTGTTCAATTTGTGCATTTATATGGGA
AACAAGGGCAGGGCTGTAAGAGCCGGGATTATCTCAGCATTATTGAAGAT
GCTTACAGATTCAAGGAATTGTATGGTTGACGAGGCTCTGACCATACTGT
CAGTTCTAGCTAGTAACCCAGAGGCTAAGATCGCTATAGTCAAAGCCAGC
ACGATACCTGTTCTAATAGATCTTCTGAGAACAGGTCTGCCACGTAACAA
AGAGAATGCGGCTGCCATTTTACTTTCCTTGTGCAAGAGGGACACTGA
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