CX077850

Overview
NameCX077850
Unique NameCX077850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.746e-38
Identity = 74/129 (57.36%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 385
            II RFE+KGF L  +K +   +    +HY DL  +PF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:   25 IIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.057e-37
Identity = 72/129 (55.81%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 385
            II RFE KGF+L GLK+M V    AEKHY     +PFF SL+++ITS PVVAM+W+GEGV+ + R IIGATNP  + PGTIRGD  I  GRN+IHGSD  ++A+ E++LWF D  + NW  ++ PW+ E
Sbjct:   21 IIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNPLNAEPGTIRGDFGISVGRNLIHGSDGPDTAKDEVSLWFSDAELANWTPAITPWVVE 149          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.381e-37
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 385
            II RFE+KGF L  LK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:   24 IIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDKM_DICDI (Nucleoside diphosphate kinase, mitochondrial OS=Dictyostelium discoideum GN=ndkM PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.017e-37
Identity = 77/122 (63.11%), Postives = 94/122 (77.05%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSS 364
            II RFEKKGF L G+K++      A KHYEDL+ KPFF  L+++ +SG VVAM++EG+ VV+TGR +IGAT+P+QSAPGTIR DL I TGRNIIHGSDS ESA  EIALWF +  I NW S+
Sbjct:   92 IIARFEKKGFKLVGIKILVPTPEHAAKHYEDLNKKPFFNGLVKFFSSGAVVAMVFEGKDVVRTGRVLIGATDPSQSAPGTIRFDLCIETGRNIIHGSDSNESAAHEIALWFKEDEIANWVST 213          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.017e-37
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 385
            II RFE+KGF L  +K     +    +HY DL  +PF+  L+EY++SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA KEIALWF D   +  +S  + W+YE
Sbjct:   25 IIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESANKEIALWFKDEELVENKSCAYEWVYE 153          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.247e-37
Identity = 74/129 (57.36%), Postives = 94/129 (72.87%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 385
            I+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:   21 ILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDK3_HUMAN (Nucleoside diphosphate kinase 3 OS=Homo sapiens GN=NME3 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.247e-37
Identity = 71/129 (55.04%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 385
            I+ RFE+KGF L  LKL+        +HY +L  +PF+G L++Y+ SGPVVAM+W+G  VV+T R +IGATNPA + PGTIRGD  I  G+N+IHGSDSVESA++EIALWF  D  + W+ S   W+YE
Sbjct:   41 IVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAGHWLYE 169          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 72/129 (55.81%), Postives = 94/129 (72.87%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 385
            I+ RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:   24 IVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDK8_HUMAN (Putative nucleoside diphosphate kinase OS=Homo sapiens GN=NME2P1 PE=5 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.853e-37
Identity = 73/129 (56.59%), Postives = 94/129 (72.87%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 385
            II RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+L F P+  ++++S  H W+YE
Sbjct:    9 IIKRFEQKGFRLVAMKFLPASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLRFKPEELVDYKSCAHDWVYE 137          
BLAST of CX077850 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 8.950e-37
Identity = 72/129 (55.81%), Postives = 93/129 (72.09%), Query Frame = 2
Query:    2 IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 385
            II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:   21 IIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
The following BLAST results are available for this feature:
BLAST of CX077850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA2_XENLA4.746e-3857.36Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_MICAN1.057e-3755.81Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDKB_PIG1.381e-3758.14Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDKM_DICDI4.017e-3763.11Nucleoside diphosphate kinase, mitochondrial OS=Di... [more]
NDKA1_XENLA4.017e-3757.36Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]
NDK_GLOVI5.247e-3757.36Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK3_HUMAN5.247e-3755.04Nucleoside diphosphate kinase 3 OS=Homo sapiens GN... [more]
NDKB_CANFA6.853e-3755.81Nucleoside diphosphate kinase B OS=Canis familiari... [more]
NDK8_HUMAN6.853e-3756.59Putative nucleoside diphosphate kinase OS=Homo sap... [more]
NDK_SYNP68.950e-3755.81Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5D06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5D06-G11-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077850 ID=CX077850; Name=CX077850; organism=Citrus sinensis; type=EST; length=607bp
AATCATCATCAGATTTGAGAAGAAGGGTTTCTCTTTGAAGGGTTTGAAGC
TTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATGAGGATTTGTCA
TCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACCTCTGGTCCTGT
TGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGACTGGCCGCACTA
TTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAACCATCCGTGGT
GATTTGGCTATCGTGACGGGCAGGAATATTATCCATGGAAGTGACTCAGT
TGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGATGGCCCTATTA
ACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAACTAATGTTTGG
TTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCTATCCCTATCCC
TATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGTTATGAAGTATT
GAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGCTTTTATTCTTGTG
GTTGCCATATACAATATTTAAGCTTTTTTGTTGACTGTATTAAAAAAAAA
AAAAAAA
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