CX077777

Overview
NameCX077777
Unique NameCX077777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.138e-26
Identity = 64/192 (33.33%), Postives = 108/192 (56.25%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLK 579
            +G I++D N    GT+ G T  +L K T  +P K   GGQSA R  RL  +  H ++ +  E AT+ F+ P   +  + GL+L G  + K E ++ D     L+ KI++  D+ Y  E G  + ++ ++++L ++  ++EK LI ++F+E I  D G   +G    +K LE+GA++ LIV E++ I R  +K
Sbjct:  142 YGVILVDRNEATIGTVRGKTITILKKLTSGVPGKFKAGGQSARRLERLIDDAAHQFMVRIGEYATESFM-PILEEKKLKGLLLGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLDKASDLLRDIDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLEMGAIDTLIVTEDIGITRVTVK 332          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.204e-25
Identity = 65/192 (33.85%), Postives = 107/192 (55.73%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLK 579
            +G I++D N    GT+ G T  VL K T  +P K   GGQSA R  RL  +  H ++ +  E AT+ F+ P   +  + GL+L G  + K E ++ D     L+ KI++  D+ Y  E G  + +E ++++L ++  ++EK LI ++F+E I  D G   +G    +K L +GA++ LIV E++ I R  +K
Sbjct:  142 YGVILVDRNEATIGTVKGKTITVLKKLTSGVPGKFKAGGQSARRLERLIDDAAHQFMVRIGEYATESFM-PILEEKKLKGLLLGGPGNTKNEFAEKDYLHHELKKKIIDTFDLCYTEEFGIRELLEKASDLLRDLDLMKEKNLIQRFFKELIKDDGGLSAYGEAQVMKYLGMGAIDTLIVTEDIGITRVTVK 332          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 58/191 (30.37%), Postives = 110/191 (57.59%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLK 579
            +G +V+D      G L+G   E     T  +P K  +GGQSA RF +LR+   H++ ++  + A++ F+  A  Q +  G+++ G +  K E    + F   ++ K+L++ DV+Y  E+G ++ +  ++E L ++  + EK+L+ ++F E+  D+GK  +G D+  + L +GAV+IL++ E+L   R  +K
Sbjct:  140 YGLLVLDRREATVGLLTGKQIEAFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEVFL--AVEQKDFEGVLIGGPSPTKEEFEAGNFFHHEIEKKVLDLFDVAYTDESGLSELVNAASERLEDLDLMVEKKLMQQFFRELVSDSGKATYGEDNVRENLIIGAVDILLISEDLRAVRETVK 328          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.606e-24
Identity = 73/231 (31.60%), Postives = 114/231 (49.35%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEE-ISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG-EIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            D +G +VMD      G + G   E + + T D+P KH  GGQS  RF RL     H + +K  E A + F        ++ G+I+ G    K E    D     L+ K+L VVDV    E+G  +A+  + E L   + ++EKRL+ K+ EE ++ +   Y   VD+ LK   +GAVE+L+V E+L+  + +L+    G E ++    +D+             AEL V+E
Sbjct:  138 DVYGILVMDRREATIGLVKGKRIEPVKRLTSDVPGKHKAGGQSQRRFDRLIEHAAHEFYQKVGEAAREAF----EDVKDLKGIIVGGPGPTKEEFLDGDYLPKDLKEKVLTVVDVGNTDESGLREALNKAEEALKEAELVREKRLVRKFMEEAVNGELAAYGEEVDELLK---MGAVEVLLVSEDLEGYKVILRCPECGYENIVTVKEKDEAKKYVEECPECGEAELNVEE 361          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 60/187 (32.09%), Postives = 105/187 (56.15%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINR 567
            +G IV+D      G L G   EVL   T  +P KH +GGQS++RF RLR    H + +K  E+A++  +     +  + G+++ G +  K E  + +     LQ K+L + DV Y  E+G  + +E + ++L  V  I+EK L+ ++ +E+++D G   +G ++  + +ELGAV+ L++ E+L   R
Sbjct:  137 YGLIVLDRREATVGLLKGKRIEVLDWDTSMVPGKHRQGGQSSVRFERLREIAIHEFYKKVGEMASEALL---PYKDKLIGILIGGPSPTKEEFYEGEYLHHELQKKVLGLFDVGYTDESGLYELVEKAKDVLQEVDIIREKNLMQRFLKEVARD-GLAAYGEEEVRRYIELGAVDTLLLSEDLRYER 319          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.246e-22
Identity = 56/196 (28.57%), Postives = 102/196 (52.04%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG 594
            FG +V+D      G L G   +     T  +P K  +GGQSA RF +LR+   H++ ++  + A++ F+  A    ++ G+++ G +  K E    +     LQ KIL + D +Y  E+G ++ +  + E L +++ + +K  +  +F+E+  D+GK  +G       LE+ AV++L++ E+L   R   K S  G
Sbjct:  141 FGLLVLDRREATIGLLVGKRIQAFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEIFM--AVDHKDLKGVLIGGPSPTKEEFYGGEFLHHELQKKILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGETQVRANLEINAVDVLLLSEDLRAERVTTKCSVCG 334          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.125e-22
Identity = 58/198 (29.29%), Postives = 101/198 (51.01%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG 594
            + +G  V+D       TL G   ++L   T  +P KH  GGQS  RF RL     H ++++  E   + F+       ++ G+IL G    K E    D     L+ K++  VD SY GE G  + I+ S ++LS +  ++EK+L+ ++  E+  + G   +G  +  + L++GAVE+L++ E+L   R   + ++ G
Sbjct:  140 ETYGLAVLDRKEATIATLKGKRIDILKTLTSGVPGKHKAGGQSQRRFDRLIDLAAHEFLKRIGEHMNEAFLQI----DDLKGIILGGPGHTKEEFLNGDYLHHELKKKVITTVDTSYTGEFGIREVIDKSMDVLSEIDVMREKKLVQRFLRELINEDGLASYGEREVRQHLQMGAVEVLLLSEDLKYQRGTYECASCG 333          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.055e-21
Identity = 55/196 (28.06%), Postives = 105/196 (53.57%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG 594
            +G +++D      G L G   EV+      +P K  +GGQSA RF +LR    H++ ++  +  ++ F+    ++  + G+++ G +  K E ++       LQ K+L + D  Y  E+GF++ I  + E L ++  +++K+ +  +F+EI+ ++GK  +G D+    LE+ AV++L++ E L   R  LK    G
Sbjct:  141 YGLLLLDLREATIGMLVGRQTEVIKHLHSTVPGKQRKGGQSAHRFEQLRRIAIHDFYKRIGDATSEAFLELDPAE--LKGILIGGHSPTKEEFNEGGFLHYELQKKVLGLFDTGYTDESGFSELINAAEETLQSIDLLKQKKDMEIFFKEIATESGKISYGEDNVRANLEIKAVDVLLLSEELRAERVTLKCRVCG 334          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 63/206 (30.58%), Postives = 106/206 (51.46%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG---EIVIK 609
            + +G  V+D       TL G    +L+  T  +P KH  GGQS  RF R+     H + ++  E   + F+    +   + G+I+ G    K E  + D  +  ++ KI+  VD SY GE G  + I+ SA+IL+++  +QEK+++ K+  E+ +D G   +G  +    L +GAV+ L++ E+L   R V K  + G   EI +K
Sbjct:  140 ETYGLAVIDRKEATIATLRGKKVNILNHLTSGVPGKHKAGGQSQRRFDRVIDLAAHEFKKRIGEHMNEDFL----ALEELEGVIIGGPGFTKEEFVKGDYLNYEIKDKIIATVDTSYTGEFGIREVIDKSADILNDLDVMQEKKVVQKFLHELVKDKGLASYGEREVRTNLIMGAVDTLLLSEDLTAMRKVFKCPSCGNEEEITVK 341          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.350e-21
Identity = 53/196 (27.04%), Postives = 101/196 (51.53%), Query Frame = 1
Query:    7 FGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG 594
            +G +V+D      G L G   +     T  +P K  +GGQSA RF +LR+   H++ ++  + A++ F+  A    ++ G+++ G +  K E    +     L  KIL + D +Y  E+G ++ +  + E L +++ + +K  +  +F+E+  D+GK  +G       LE+ +V++L++ E+L   R   K S  G
Sbjct:  141 YGLLVLDRREATIGLLVGKRIQPFRNLTSTVPGKQRKGGQSAHRFQQLRLIAIHDFYKRIGDAASEVFM--AVDHKDLKGVLIGGPSPTKEEFHAGEFLHHELMKKILGLFDTAYTDESGLSELVNAAGEKLQDLELMGQKNAVRDFFKELIADSGKVAYGESQVRANLEINSVDVLLLSEDLRAERVTTKCSVCG 334          
The following BLAST results are available for this feature:
BLAST of CX077777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_METMP4.138e-2633.33Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM71.204e-2533.85Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METBU2.682e-2530.37Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METKA6.606e-2431.60Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_ARCFU2.510e-2332.09Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF11_METAC1.246e-2228.57Peptide chain release factor subunit 1-1 OS=Methan... [more]
RF1_METTH2.125e-2229.29Peptide chain release factor subunit 1 OS=Methanob... [more]
RF12_METAC1.055e-2128.06Peptide chain release factor subunit 1-2 OS=Methan... [more]
RF1_METS32.350e-2130.58Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METMA2.350e-2127.04Peptide chain release factor subunit 1 OS=Methanos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A02-A3-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077777 ID=CX077777; Name=CX077777; organism=Citrus sinensis; type=EST; length=698bp
GATAAATTTGGGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCAC
ATTAAGTGGAAACACAAGAGAGGTGCTTCATAAGTTTACTGTTGATCTGC
CGAAGAAGCATGGAAGAGGAGGGCAGTCAGCTCTTCGTTTTGCTCGTCTT
CGGATGGAGAAACGGCACAACTATGTGAGGAAGACAGCAGAGCTTGCTAC
ACAGTTCTTTATCAATCCTGCTACCAGTCAGCCCAATGTGTCTGGATTAA
TTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGCCAGTCTGATATG
TTTGATCCTCGTTTACAAGCCAAGATATTGAATGTTGTTGATGTTTCTTA
TGGTGGGGAAAATGGTTTTAACCAAGCAATTGAGTTGTCTGCAGAAATCT
TATCAAATGTGAAGTTCATACAAGAAAAACGTTTGATTGGAAAATACTTT
GAGGAGATTAGTCAGGACACTGGAAAATATGTGTTTGGTGTTGATGACAC
TTTGAAGGCTCTGGAATTGGGTGCTGTAGAAATCCTTATTGTGTGGGAAA
ATCTGGATATCAATAGATATGTACTGAAAAACAGTGCTACTGGTGAAATT
GTTATAAAGCACTTAAACAGAGACCAAGAGGCCAATCAGAGCAACTTCCG
CGATGCAGCCACATCTGCTGAGTTGGAGGTTCAGGAAAAGACATCTTT
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