CX077760

Overview
NameCX077760
Unique NameCX077760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077760 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = -1 
Query:  233 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRI 661
            AG I + L+    PK   NF  LC   + Y Y    FHR++  F++Q             SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D +  + +L  V+    + P  P +I
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE-SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161
[Close]
BLAST of CX077760 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = -1 
Query:  233 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRI 661
            AG I + L+    PK   NF  LC   + Y Y    FHR++  F++Q             SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D +  + +L  V+    + P  P +I
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE-SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDEERPHNPHKI 161
[Close]
BLAST of CX077760 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = -1 
Query:  233 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPKVPCRI 661
            AG I + L+    PK   NF  LC   + Y Y    FHR++  F++Q             SIYG+ F+DE    L+    G+++MANAG + NGSQFF    +   L+N+H +FG V  D +  + +L  V+    + P  P +I
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE-SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLSEVDIDDDERPHNPHKI 161
[Close]
BLAST of CX077760 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.436e-11
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = -1 
Query:  248 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXGISIYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVI-DGMDVVRKLESVETSRTDYPK 661
            AG I + L+    PK   NF  LC   + Y Y    FHR++  F++Q             SIYG  F+DE    L+    G+++MANAGP+ NGSQFF    +   L+N+H +FG V  D +  + +L  V+    + P+
Sbjct:   21 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGTGGE-SIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLTEVDIDDEERPR 156
The following BLAST results are available for this feature:
BLAST of CX077760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 234
Match NameE-valueIdentityDescription
SDC10_PONAB4.436e-1133.79Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA4.436e-1133.79Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN4.436e-1133.79Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
SDC10_BOVIN4.436e-1134.29Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_58H02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-58H02-P3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077760 ID=CX077760; Name=CX077760; organism=Citrus sinensis; type=EST; length=766bp
TTTTTTTCAACCGAACAATAGTACATATTCAGCTCTACCATGAGCTTACC
GAGTATTATTCTTGAGTTTCTCAGCTAATTCAACTAAGCGGAACATGCTT
TCATGTAGATAACAGTTACAAAAACCATTTGGCTCCACAAAAGTGATGAA
TTACAAAAGTCGTATTTTATGGTTGTGGTAAGATATCAGAGCTGGCAGAT
CAGGCATCTAATGGTAGTTCTCCACTATTGATAATTCTACATGGCACCTT
TGGGTAATCTGTCCTGCTTGTCTCTACAGATTCAAGTTTCCTCACAACGT
CCATTCCATCAATGACATGTCCAAACACAACATGGCGGTTGTCCAACCAT
GGTGTCTTCACTGTGCAAATGAAAAATTGGCTCCCATTGGTATTAGGACC
TGCATTGGCCATGCTTAATACTCCAGGTCCAACATGCTTCAAGACAAAGC
TCTCATCTTCAAAGCTGGAACCATAAATACTGATGCCTCCAGTTCCATCT
CCCTCAGTGAAGTCCCCTCCCTGGATCATAAAATCTTTAATAATACGGTG
GAAGGAGCATCCTTTGTAACCATATCCTTTCTCACCTGTACACAGTGCAC
GAAAGTTCTCAGCTGTTTTCGGAACAACATCTCCAAAAAGGCCCATTACT
ATTCTACCTGCAGGTTTACCTCCAATATCTACGTCAAAGAAAACTTTGGT
TGTCACTTTTGCTTGCAGCTCTACATCCTTTGCCATTGAGTTGACACAGA
ACATTCTTCGATACTT
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