EY702284

Overview
NameEY702284
Unique NameEY702284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_RHDSA (Elongation factor Ts, chloroplastic OS=Rhodomonas salina GN=tsf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 45/84 (53.57%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    7 VRKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEV 258
            + K+DL +KP++I+ KIVEGRI+KRL E+ LLEQ +I++  + +++ VK+ IA +GENI+V+RF R+NLGEGLEK+  +F+ EV
Sbjct:  130 LEKDDLSNKPQEIKEKIVEGRIQKRLNEMILLEQSFIRDSDITIEELVKRNIAILGENIQVRRFERFNLGEGLEKREDNFSEEV 213          

HSP 2 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 50/84 (59.52%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  340 AVAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            A  +SA  VK+LR++T AGMMDCKKAL E+ GD E+A E LRKKGL+ A+KKS R+A EG I SYI    + GVL+E +CET+F
Sbjct:    2 AAEISAKTVKELRDKTAAGMMDCKKALQESNGDFEQAMESLRKKGLASANKKSDRIATEGIIESYIHMGGKLGVLVEVNCETDF 85          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_DESVM (Elongation factor Ts OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=tsf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 50/83 (60.24%), Postives = 65/83 (78.31%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDS-RFGVLIEGHCETNF 588
            +A++A +VK+LRE+TGAGMMDCKKAL E GG LEKA ++LR+KGLS A KK+GR   EG IG+YI  + +  VL+E  CET+F
Sbjct:    1 MAITAQMVKELREKTGAGMMDCKKALEENGGSLEKAVDWLRQKGLSKAAKKAGRATSEGVIGNYIHSTGKIAVLVEVKCETDF 83          

HSP 2 Score: 75.485 bits (184), Expect = 4.237e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLG 216
            KPE I  KIVEG I+K  +E+ LLEQPYI++DKM ++D +   IAT+GEN+ + RFVR  LG
Sbjct:  135 KPENIIEKIVEGGIKKFYKEICLLEQPYIRDDKMTIRDLLNDVIATLGENVTIGRFVRMQLG 196          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBB (Elongation factor Ts OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tsf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA  VK+LRE TGAGMMDCKKAL+ET GD+EKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKSVKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDF 82          

HSP 2 Score: 70.0922 bits (170), Expect = 1.780e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE+I  K+V GRI+K  +E+ LLEQ ++K+    +  ++ +     G  IKV RFVR+  GEG+EK  ++FA EVA Q
Sbjct:  222 KPEKIVEKMVMGRIQKYYKEVCLLEQLWVKDGDKTITKFIDEKAKEAGSAIKVNRFVRFERGEGIEKVEENFAEEVAKQ 300          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBA (Elongation factor Ts OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tsf PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA  VK+LRE TGAGMMDCKKAL+ET GD+EKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKSVKELRERTGAGMMDCKKALTETDGDIEKAVEVLREKGLAAAAKKSGRVAAEGLVKTYISEDKKSGAIVELNCETDF 82          

HSP 2 Score: 70.4774 bits (171), Expect = 1.363e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE+I  K+V GRI+K  +E+ LLEQ ++K+    +  ++ +     G  IKV RFVR+  GEG+EK  ++FA EVA Q
Sbjct:  222 KPEKIVEKMVMGRIQKYYKEVCLLEQLWVKDSDKTITKFIDEKAKEAGSAIKVNRFVRFERGEGIEKVEENFAEEVAKQ 300          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOB6 (Elongation factor Ts OS=Clostridium botulinum (strain 657 / Type Ba4) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA +VK LRE+TGAGMMDCKKAL+E  GDLEKA E LR+KGL+ A KKSGR+A EG + +YI  D + G +IE +CET+F
Sbjct:    2 ISAKMVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIIEFNCETDF 82          

HSP 2 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE++  K+V GRI K  +E  L+EQ ++KN    +  ++++    IG +I V+ FVRY  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKVVEKMVMGRINKYYKENCLVEQLWVKNGDYTITKYLQEQSKEIGADITVEAFVRYEKGEGIEKKEEDFAEEVQRQ 302          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLONN (Elongation factor Ts OS=Clostridium novyi (strain NT) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 48/81 (59.26%), Postives = 66/81 (81.48%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            V+A +VK+LRE TGAGMMDCKKAL+ET GD+EKA E+LR+KGL+ A KK+GR+A EG + +Y+  D++  V +E +CET+F
Sbjct:    2 VTAKMVKELRERTGAGMMDCKKALTETDGDMEKAVEFLREKGLAAAAKKAGRVAAEGLVTTYLSEDNKTAVALEVNCETDF 82          

HSP 2 Score: 73.9442 bits (180), Expect = 1.233e-12
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTAAK 279
            KPE+I  K+VEGR++K L+E+ L++Q ++KN    +K  +++    +G  I + +FVR+  GEGLEKK ++FA EV  Q   K
Sbjct:  224 KPEKIVEKMVEGRVKKYLKEVCLIDQVWVKNSDYTIKKLLEEKSKEVGSPITLCKFVRFERGEGLEKKEENFAEEVQRQMNQK 306          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBM (Elongation factor Ts OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA +VK LRE+TGAGMMDCKKAL+E  GDLEKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKMVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDF 82          

HSP 2 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE++  K+V GRI K  +E  L+EQ ++KN    +  ++++    IG +I V+ FVRY  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKVVEKMVMGRINKYYKENCLVEQLWVKNGDYTITKYLQEQSKEIGADITVEAFVRYEKGEGIEKKEEDFAEEVQRQ 302          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBL (Elongation factor Ts OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA +VK LRE+TGAGMMDCKKAL+E  GDLEKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKMVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDF 82          

HSP 2 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE++  K+V GRI K  +E  L+EQ ++KN    +  ++++    IG +I V+ FVRY  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKVVEKMVMGRINKYYKENCLVEQLWVKNGDYTITKYLQEQSKEIGADITVEAFVRYEKGEGIEKKEEDFAEEVQRQ 302          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBK (Elongation factor Ts OS=Clostridium botulinum (strain Okra / Type B1) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA +VK LRE+TGAGMMDCKKAL+E  GDLEKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKMVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDF 82          

HSP 2 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE++  K+V GRI K  +E  L+EQ ++KN    +  ++++    IG +I V+ FVRY  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKVVEKMVMGRINKYYKENCLVEQLWVKNGDYTITKYLQEQSKEIGADITVEAFVRYEKGEGIEKKEEDFAEEVQRQ 302          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOBJ (Elongation factor Ts OS=Clostridium botulinum (strain Kyoto / Type A2) GN=tsf PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 50/81 (61.73%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA +VK LRE+TGAGMMDCKKAL+E  GDLEKA E LR+KGL+ A KKSGR+A EG + +YI  D + G ++E +CET+F
Sbjct:    2 ISAKMVKDLREKTGAGMMDCKKALTECDGDLEKAVEVLREKGLAAAAKKSGRVAAEGIVSTYISEDMKNGSIVEFNCETDF 82          

HSP 2 Score: 71.2478 bits (173), Expect = 7.990e-12
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE++  K+V GRI K  +E  L+EQ ++KN    +  ++++    IG +I V+ FVRY  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKVVEKMVMGRINKYYKENCLVEQLWVKNGDYTITKYLQEQSKEIGADITVEAFVRYEKGEGIEKKEEDFAEEVQRQ 302          
The following BLAST results are available for this feature:
BLAST of EY702284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_RHDSA2.098e-2053.57Elongation factor Ts, chloroplastic OS=Rhodomonas ... [more]
EFTS_DESVM2.098e-2060.24Elongation factor Ts OS=Desulfovibrio vulgaris (st... [more]
EFTS_CLOBB2.098e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBA2.098e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOB63.578e-2062.96Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLONN4.673e-2059.26Elongation factor Ts OS=Clostridium novyi (strain ... [more]
EFTS_CLOBM4.673e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBL4.673e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBK4.673e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]
EFTS_CLOBJ4.673e-2061.73Elongation factor Ts OS=Clostridium botulinum (str... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702284 ID=EY702284; Name=EY702284; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGAAGGAAGATCTCTTGTCGAAACCAGAGCAGATCAGGTC
AAAGATTGTTGAAGGGCGGATCAGAAAGAGGCTTGAGGAGTTGGCATTGC
TTGAACAACCATACATTAAGAATGATAAGATGGTGGTAAAGGACTGGGTG
AAGCAAACCATTGCAACCATTGGAGAAAACATAAAAGTCAAAAGGTTTGT
GCGGTACAATCTTGGAGAGGGCTTGGAGAAGAAAAGCCAGGATTTTGCTG
CTGAGGTTGCTGCTCAGACTGCTGCAAAACCAATCGCAAAAGAACAGCCT
GCTCCAGCTGAAACAAAGGAAACTGTAGAGAAACCACCAGCAGTTGCAGT
CTCTGCTGCACTTGTTAAACAACTAAGGGAGGAAACAGGAGCAGGAATGA
TGGACTGCAAGAAAGCTCTCTCTGAAACTGGAGGGGATCTTGAGAAGGCA
CAGGAGTACCTCAGGAAAAAGGGTCTCTCTATTGCTGACAAGAAATCAGG
GCGGCTTGCACCGGAGGGGAAAATTGGGTCATATATTCCTGATTCTCGCT
TCGGAGTACTAATTGAAGGCCATTGTGAGACAAACTTTGGGGGGTAAAAA
TGACAAATTTCCAGGAGCTGGGTTATTGATCTAACAATGCAAGCTGTGGG
TTTGGCCCGGAAGTGGGATTTCTTACCCCTTGAAAAACTTTCCCGGAGGA
GCTTCTTAATTTAACAAACAGGAAACTTCAAATCCACAAGCGGGGGGCCC
TTTTTCCGAAACCTCCAAAAACTTTTGGACGGACATCTCTTGAAGGGAGC
GATCCTCCACACGCGTCTGGGGGGGCTTGCTCCTTTCCCACCCCCC
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