EY702284

Overview
NameEY702284
Unique NameEY702284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_ALHEH (Elongation factor Ts OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 51/83 (61.45%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGS-YIPDSRFGVLIEGHCETNF 588
            +A+SA+LVKQLRE TG+GMM+CKKAL ET GDL+ A E +RKKGL+ ADKKSGR+A EG I +    D   GVL+E + ET+F
Sbjct:    1 MAISASLVKQLRERTGSGMMECKKALVETDGDLDAAVELMRKKGLAKADKKSGRIAAEGIIAAKRSEDGHSGVLVEINSETDF 83          

HSP 2 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE+I  K+V+GR++K + E  L+ QP++K+    V + +K      G   KV RFVRY +GEG EKK ++FA EV AQ
Sbjct:  216 KPEEIIEKMVQGRLKKFINEQTLVGQPFVKDPDQTVGELLK------GAGAKVARFVRYEVGEGKEKKEENFAEEVMAQ 288          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_THICR (Elongation factor Ts OS=Thiomicrospira crunogena (strain XCL-2) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 47/83 (56.63%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +AV+A++VK+LRE TGAGMMDCKKAL+ET G++E+A E+LRKKG++ ADKK+GR A EG I   +  D +   ++E +CET+F
Sbjct:    1 MAVTASMVKELREATGAGMMDCKKALAETDGNMEEAIEFLRKKGMAGADKKAGRTAAEGVIAIAVSDDKKKAAIVEVNCETDF 83          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_LEPBP (Elongation factor Ts OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDS-RFGVLIEGHCETNF 588
            +AVS+  +K LRE TGAGMMDCKKAL E GGD+EKA  YLR+KGL+ A K++GR   EGK+ +Y+  + + GVL+E +CET+F
Sbjct:    1 MAVSSEQIKDLRERTGAGMMDCKKALEEKGGDIEKAVTYLREKGLAKAAKRAGRETGEGKVIAYVHGTGKTGVLVELNCETDF 83          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_LEPBA (Elongation factor Ts OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDS-RFGVLIEGHCETNF 588
            +AVS+  +K LRE TGAGMMDCKKAL E GGD+EKA  YLR+KGL+ A K++GR   EGK+ +Y+  + + GVL+E +CET+F
Sbjct:    1 MAVSSEQIKDLRERTGAGMMDCKKALEEKGGDIEKAVTYLREKGLAKAAKRAGRETGEGKVIAYVHGTGKTGVLVELNCETDF 83          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_ALKOO (Elongation factor Ts OS=Alkaliphilus oremlandii (strain OhILAs) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 44/80 (55.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDSRFGVLIEGHCETNF 588
            ++A++VK+LRE+TGAGMMDCKKAL+E  G++++A E LR++GL+   KKSGR+A EG + SYI   R GV++E + ET+F
Sbjct:    3 ITASMVKELREKTGAGMMDCKKALTEAEGNMDRAVEVLRERGLAAVAKKSGRIAAEGLVESYIHGGRIGVIVEVNSETDF 82          

HSP 2 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQTA 273
            KPE+I  K+VEGRI K  +E+ LLEQP++K+  + V D + + I+ IGENI ++RF RY +GEG+EKK ++FA EVA Q A
Sbjct:  134 KPEKIVEKMVEGRIDKFYKEICLLEQPFVKDPDVTVGDLLTEKISKIGENISIRRFTRYEVGEGIEKKEENFAEEVAKQMA 214          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_THEYD (Elongation factor Ts OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 46/82 (56.10%), Postives = 63/82 (76.83%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDSRFGVLIEGHCETNF 588
            +A++A +VK+LRE+TGAGMM+CKKAL  +GGD  KA + LR+KGL+ A KK+ R A EG I SYI   + GV++E +CET+F
Sbjct:    1 MAITAQMVKELREKTGAGMMECKKALETSGGDFNKAIDILRQKGLATAQKKASREAKEGIITSYIHMDKIGVMLELNCETDF 82          

HSP 2 Score: 69.707 bits (169), Expect = 2.325e-11
Identity = 30/64 (46.88%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   28 SKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGE 219
            +KP Q+  KIVEG++ K  EE+ LL+QP+IK  +  +KD + + +A  GENI V+RFVR+ +G+
Sbjct:  132 NKPPQVIEKIVEGKLEKFFEEMCLLDQPFIKEPEKKIKDLITEKVAKFGENIMVRRFVRFQVGQ 195          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_THEP1 (Elongation factor Ts OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 47/81 (58.02%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIP-DSRFGVLIEGHCETNF 588
            +S  L+K+LRE TGAG++DCKKAL E GGD+EKA E LRKKG + A+KK+GR   EG I +Y+  + R GVL+E +CET+F
Sbjct:    3 ISMDLIKKLREMTGAGILDCKKALEEAGGDMEKAVEILRKKGAATAEKKAGRTTKEGIIVAYVHFNGRIGVLLEMNCETDF 83          

HSP 2 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1
Query:    7 VRKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLE 228
            + +  +  KPE I  KIVEG++ K  E++ L EQ YI +D   VKD + + IA  GENI+V RF RY +GEG E
Sbjct:  125 IYRAQIKDKPENIVEKIVEGKLEKYFEQVCLYEQTYIFDDTKKVKDLINELIAKTGENIRVSRFTRYEIGEGYE 198          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_RHOCS (Elongation factor Ts OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 48/80 (60.00%), Postives = 62/80 (77.50%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDSRFGVLIEGHCETNF 588
            +SAALVK+LRE+TGAGMMDCKKAL+ET GD+E A ++LRKKGL+ A KKSGR+A EG +G  +     G  +E + ET+F
Sbjct:    4 ISAALVKELREKTGAGMMDCKKALTETSGDMEAAVDWLRKKGLAAAAKKSGRVAAEGLVG-VVAAPTAGACVEVNAETDF 82          

HSP 2 Score: 76.2554 bits (186), Expect = 2.484e-13
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAA 264
            KPE+I  K+VEGR+RK  EE+ LLEQ ++ + +  ++  V+    T+G  +K+  FVR+ LGEG+EK + DFAAEVA+
Sbjct:  227 KPEEIVQKMVEGRVRKYYEEVVLLEQVFVVDGETKIRKVVENAGKTVGAPVKLTGFVRFALGEGIEKATSDFAAEVAS 304          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_MAGSM (Elongation factor Ts OS=Magnetococcus sp. (strain MC-1) GN=tsf PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 47/82 (57.32%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDSRFGVLIEGHCETNF 588
            +AV+A++VK+LRE+TG GMMDCKKAL+ETGGD+E A ++LRKKG++ A KKS R+A EGK+ +    S  GV++E + ET+F
Sbjct:    1 MAVTASMVKELREKTGVGMMDCKKALAETGGDMEAAVDWLRKKGMASAQKKSARVAAEGKVTTLSLGS-VGVMLEVNAETDF 81          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_PROA2 (Elongation factor Ts OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tsf PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.151e-18
Identity = 49/81 (60.49%), Postives = 62/81 (76.54%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            +SA  VK LR++TG GMMDCKKAL ETGGD++KA EYLRKKG ++A K++GR A EG I   I  D+  GV+IE +CET+F
Sbjct:    4 ISAKDVKDLRDKTGVGMMDCKKALEETGGDMQKAIEYLRKKGAALAAKRAGREASEGIIAIRISDDNTSGVIIELNCETDF 84          
The following BLAST results are available for this feature:
BLAST of EY702284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_ALHEH3.956e-1961.45Elongation factor Ts OS=Alkalilimnicola ehrlichei ... [more]
EFTS_THICR5.167e-1956.63Elongation factor Ts OS=Thiomicrospira crunogena (... [more]
EFTS_LEPBP5.167e-1957.83Elongation factor Ts OS=Leptospira biflexa serovar... [more]
EFTS_LEPBA5.167e-1957.83Elongation factor Ts OS=Leptospira biflexa serovar... [more]
EFTS_ALKOO5.167e-1955.00Elongation factor Ts OS=Alkaliphilus oremlandii (s... [more]
EFTS_THEYD6.748e-1956.10Elongation factor Ts OS=Thermodesulfovibrio yellow... [more]
EFTS_THEP16.748e-1958.02Elongation factor Ts OS=Thermotoga petrophila (str... [more]
EFTS_RHOCS8.813e-1960.00Elongation factor Ts OS=Rhodospirillum centenum (s... [more]
EFTS_MAGSM8.813e-1957.32Elongation factor Ts OS=Magnetococcus sp. (strain ... [more]
EFTS_PROA21.151e-1860.49Elongation factor Ts OS=Prosthecochloris aestuarii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702284 ID=EY702284; Name=EY702284; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGAAGGAAGATCTCTTGTCGAAACCAGAGCAGATCAGGTC
AAAGATTGTTGAAGGGCGGATCAGAAAGAGGCTTGAGGAGTTGGCATTGC
TTGAACAACCATACATTAAGAATGATAAGATGGTGGTAAAGGACTGGGTG
AAGCAAACCATTGCAACCATTGGAGAAAACATAAAAGTCAAAAGGTTTGT
GCGGTACAATCTTGGAGAGGGCTTGGAGAAGAAAAGCCAGGATTTTGCTG
CTGAGGTTGCTGCTCAGACTGCTGCAAAACCAATCGCAAAAGAACAGCCT
GCTCCAGCTGAAACAAAGGAAACTGTAGAGAAACCACCAGCAGTTGCAGT
CTCTGCTGCACTTGTTAAACAACTAAGGGAGGAAACAGGAGCAGGAATGA
TGGACTGCAAGAAAGCTCTCTCTGAAACTGGAGGGGATCTTGAGAAGGCA
CAGGAGTACCTCAGGAAAAAGGGTCTCTCTATTGCTGACAAGAAATCAGG
GCGGCTTGCACCGGAGGGGAAAATTGGGTCATATATTCCTGATTCTCGCT
TCGGAGTACTAATTGAAGGCCATTGTGAGACAAACTTTGGGGGGTAAAAA
TGACAAATTTCCAGGAGCTGGGTTATTGATCTAACAATGCAAGCTGTGGG
TTTGGCCCGGAAGTGGGATTTCTTACCCCTTGAAAAACTTTCCCGGAGGA
GCTTCTTAATTTAACAAACAGGAAACTTCAAATCCACAAGCGGGGGGCCC
TTTTTCCGAAACCTCCAAAAACTTTTGGACGGACATCTCTTGAAGGGAGC
GATCCTCCACACGCGTCTGGGGGGGCTTGCTCCTTTCCCACCCCCC
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