EY702201

Overview
NameEY702201
Unique NameEY702201
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length857
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP14_ORYSJ (Expansin-A14 OS=Oryza sativa subsp. japonica GN=EXPA14 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 6.678e-16
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1
Query:   76 TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 252
            T W PM RNWG NW S +YL GQ+LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  203 TDWMPMVRNWGANWHSLSYLTGQTLSFRVTNMDGQTLVFKNIVPSGWKFGQTFTSKLQFK 262          

HSP 2 Score: 29.261 bits (64), Expect = 6.678e-16
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGSQN 77
            FNLVL+TNV   G + ++ I GS +
Sbjct:  178 FNLVLVTNVATTGSIKSMDIMGSNS 202          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP24_ORYSJ (Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.126e-15
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   76 TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 252
            T W PM RNWG NW S +YL GQ LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  219 TDWMPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 278          

HSP 2 Score: 29.261 bits (64), Expect = 1.126e-15
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGSQN 77
            FNLVL+TNV   G + ++ I GS +
Sbjct:  194 FNLVLVTNVATTGSIKSMDIMGSNS 218          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP19_ORYSJ (Expansin-A19 OS=Oryza sativa subsp. japonica GN=EXPA19 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.480e-15
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   64 KGLRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 237
            KG  TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  185 KGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 242          

HSP 2 Score: 31.9574 bits (71), Expect = 2.480e-15
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGS 71
            F LVL+TN+ G+G + ++S+KGS
Sbjct:  165 FELVLVTNMAGSGSIASMSVKGS 187          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.228e-15
Identity = 31/58 (53.45%), Postives = 40/58 (68.97%), Query Frame = 1
Query:   64 KGLRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 237
            KG  TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  176 KGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          

HSP 2 Score: 31.5722 bits (70), Expect = 3.228e-15
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGS 71
            F LVL+TN+ G+G + ++S+KGS
Sbjct:  156 FELVLVTNMAGSGSIVSMSVKGS 178          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 4.174e-15
Identity = 32/60 (53.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   76 TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 252
            T W PM RNWG NW S +YL GQ LSF+VT  DG+T+   N+ P+ W FG+T+ S  QF+
Sbjct:  221 TDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQFK 280          

HSP 2 Score: 28.1054 bits (61), Expect = 4.174e-15
Identity = 13/29 (44.83%), Postives = 19/29 (65.52%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGSQ--NWL 83
            FNLVL+TNV   G + ++ + GS   +WL
Sbjct:  196 FNLVLVTNVATTGLIKSMDVMGSNSTDWL 224          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.027e-14
Identity = 35/61 (57.38%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   58 QSKGLRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 240
            Q KG +TGW  M +NWGQNW + T L GQ LSF+VTTSDG T   +NV P +W FG+T+ G
Sbjct:  209 QVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNWGFGQTFDG 269          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 63.5438 bits (153), Expect = 2.014e-14
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   82 WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 252
            W  M+ NWG  W S  YL GQ LSF+VT +DG+T+   NV    W FG+T+ S  QF+
Sbjct:  205 WMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQFK 262          

HSP 2 Score: 36.1946 bits (82), Expect = 2.014e-14
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGSQ--NWLA 86
            F LVL+TNVG AG + A+ +KGS+  +W+A
Sbjct:  178 FQLVLLTNVGAAGSIKAMDVKGSKSPDWMA 207          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.401e-14
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1
Query:   64 KGLRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGR-TVTSYNVAPASWSFGRTY 234
            KG RTGW  MS NWG ++Q+ + L GQSLSF++T+   R T+ +YN APASWS G+TY
Sbjct:  193 KGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          

HSP 2 Score: 30.0314 bits (66), Expect = 3.401e-14
Identity = 12/26 (46.15%), Postives = 19/26 (73.08%), Query Frame = 3
Query:    9 LVLITNVGGAGDVHAVSIKGSQ-NWL 83
            LV + NVGG GD+  +++KGS+  W+
Sbjct:  175 LVYVMNVGGPGDIKTMAVKGSRTGWI 200          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.413e-14
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1
Query:   82 WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY-SGAQFR 252
            W PM+RNWG  W S  YL GQ LSF+VT +D +T+   NV P  W FG+T+ S  QF+
Sbjct:  210 WMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQFK 267          

HSP 2 Score: 28.8758 bits (63), Expect = 4.413e-14
Identity = 12/29 (41.38%), Postives = 19/29 (65.52%), Query Frame = 3
Query:    3 FNLVLITNVGGAGDVHAVSIKGSQ--NWL 83
            F LVL+TNV  AG + ++ + GS   +W+
Sbjct:  183 FQLVLVTNVAAAGSIKSMEVMGSNTADWM 211          
BLAST of EY702201 vs. ExPASy Swiss-Prot
Match: EXP26_ARATH (Putative expansin-A26 OS=Arabidopsis thaliana GN=EXPA26 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.654e-14
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 1
Query:   58 QSKGLRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 240
            Q K  +TGW  M +NWGQNW ++T L GQ LSF+VTT+DG T   +NV P +W FG+T+ G
Sbjct:  215 QVKENKTGWITMKKNWGQNWTTSTVLTGQGLSFRVTTTDGITKDFWNVMPKNWGFGQTFDG 275          
The following BLAST results are available for this feature:
BLAST of EY702201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
EXP14_ORYSJ6.678e-1653.33Expansin-A14 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ORYSJ1.126e-1553.33Expansin-A24 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP19_ORYSJ2.480e-1553.45Expansin-A19 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ3.228e-1553.45Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ4.174e-1553.33Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ARATH1.027e-1457.38Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP13_ORYSJ2.014e-1448.28Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP18_ARATH3.401e-1456.90Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP23_ORYSJ4.413e-1451.72Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ARATH6.654e-1454.10Putative expansin-A26 OS=Arabidopsis thaliana GN=E... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702201 ID=EY702201; Name=EY702201; organism=Citrus sinensis; type=EST; length=857bp
ACTTCAACCTTGTCCTGATCACCAACGTTGGTGGTGCTGGTGATGTTCAT
GCTGTTTCAATCAAAGGGTCTCAGAACTGGCTGGCAGCCCATGTCAAGAA
ACTGGGGCCAAAACTGGCAAAGCAACACTTATCTCAATGGCCAAAGCCTG
TCATTTAAGGTCACCACAAGCGATGGCCGCACTGTGACTTCCTACAATGT
TGCCCCTGCTAGCTGGTCCTTTGGCCGAACTTACTCCGGTGCTCAATTCC
GCTAGAGCCACCAAGACCATTAGAGATTGGGTTTTAACACCTTTTTTAGC
TAAATATTCGTGTACTAAGTAGCATATTTTAGTATGAAATTTTAGCATAC
TAGGGTATATATATATATATATAATATAGAAGTAGCTAATGTGGCTAGTT
TTTGGCTTCCAGCGTCAAAAATGAAAAAAGGGGCTTATTTTAAAATGGCT
TATTTNTTTTCATTTTGAATCTATCTTTATGGTTTCAGTGGGGTGCCGAC
ATATGGGAACCTCATATCCCGTTGGAGATCCCTTTTTTAACTTTTGTTTT
TGCGGGGTTCTGCCTCCACTCTACCCACTGTCTAAGTGGAAAAATTTCCA
CCCACCAATATGCGTTGAACATCCCGCTCTCCACACTCTCTGATCTTCTT
TAGCATTGCTTGCCACAAAGCCATTTTCCCAATCGCCGTATAACTCTTGA
CTACAAATTCAATCTAAGACCTATATCCCCCCCACTTCCAGCCTCACATC
AAATCACTCCTCGCGCCGTACCACCTAGCCCTCTTCACCATACTTCCTAA
GATGCAGCTTTCAACGGCTAACAACTCCTCAACTGCGGGTCCTCTTACGA
CACCGAA
back to top