EY702180

Overview
NameEY702180
Unique NameEY702180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY702180 vs. ExPASy Swiss-Prot
Match: RN115_HUMAN (RING finger protein 115 OS=Homo sapiens GN=RNF115 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.334e-11
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 2 
Query:  371 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTPQPSELGSS 640
            D+E I + PT   ++ +   V  G LEC VC  ++  +E +R +P C+H FH  CI  WLE H TCPVCR +L  E      Q +E  +S
Sbjct:  205 DKEKITSLPTVTVTQEQ---VDMG-LECPVCKEDYTVEEEVRQLP-CNHFFHSSCIVPWLELHDTCPVCRKSLNGEDSTRQSQSTEASAS 289
[Close]
BLAST of EY702180 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.579e-11
Identity = 35/82 (42.68%), Postives = 47/82 (57.32%), Query Frame = 2 
Query:  371 DREVIDTFPTFVYSEVKTLKVGKGALECAVCLNEFEDDETLRLIPKCDHVFHPECIDAWLESHTTCPVCRSNLASEPGETTP 616
            D+E I   PT   +E     VG G LEC VC +++   E +R +P C+H+FH  CI  WLE H +CPVCR +L  +   T P
Sbjct:  206 DKEKIQALPTVPVTEEH---VGSG-LECPVCKDDYALGERVRQLP-CNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNTATNP 282
The following BLAST results are available for this feature:
BLAST of EY702180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RN115_HUMAN7.334e-1140.00RING finger protein 115 OS=Homo sapiens GN=RNF115 ... [more]
RN126_HUMAN9.579e-1142.68RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-H11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702180 ID=EY702180; Name=EY702180; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCTCTCTCTCTCAACTCTCTCTCCACATCTCATGCAATAA
TGGGGTCACGACTCTTACCCTACTCCGCGAAACATGGGACCAATCCCCTT
TCTCTCCAGCTCCTCATGCTCCTCGTGGCCCACGCGCTCCCCCTCTCGCT
CGCCCAGCGCAGCCCCGAGCCCCCGGGCTCCGTCGACCCCTACTCCAACA
TGAAATTCAGCCCCTCACTCGCCATAATAATCGTCGTGTTGATTTCGGCT
CTCTTCTTCATGGGCTTCTTCTCCATCTACATTCGCCACTGCTCCGACTC
CAGCAACTCCGTCATCCGCCCCGCCGGCGCCGGAGGCAACCGCTCCAGGC
GCGGCGCCGCCCGCGGCCTCGACCGCGAGGTCATCGACACTTTCCCGACC
TTCGTGTACTCGGAGGTCAAGACGCTGAAGGTCGGCAAAGGCGCGCTCGA
GTGCGCCGTCTGCCTGAACGAGTTCGAGGATGACGAAACGCTGCGTTTGA
TCCCGAAATGCGACCACGTCTTCCACCCCGAGTGCATCGACGCCTGGCTT
GAATCGCACACCACGTGTCCTGTTTGCCGCTCGAATTTGGCCTCTGAACC
CGGTGAGACAACTCCTCAACCCAGTGAGCTGGGCTCATCCGAGGTGGATC
TCGAGGCCCAAAACGACGCCGCGGTAGCAGCAGAGACTCCACAAGAAACA
CAACCACAGCCACAAGGCTCACAACCACCGGAACCTCAAGTTATCAGCGT
CAACTTTGCTAATCNAACGCTTAATAGGAACCGTACACGCGGCTCGAGAT
CCGGGAGGCCACGAAATTCCCGCGGTCTCACTCACCGGGCATTCTTTGGT
CCACCANGTAAGGACCCGAGGGTTCACTTTGAGATACCGTT
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