CX077154

Overview
NameCX077154
Unique NameCX077154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS9_ENCCU (40S ribosomal protein S9 OS=Encephalitozoon cuniculi GN=RPS9 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.740e-17
Identity = 51/118 (43.22%), Postives = 73/118 (61.86%), Query Frame = -3
Query:  384 RDLLTLDEKNPRRI-FEGEALLRRMHRYGFL--------EESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG 710
            R  + L   NP  I   G +LLRR+ +YG L        +E  N L+ VL LT+ ++LERRLQ  VF +G+AKS+HHAR+LI  R I +  Q+V++P F+VR D +  IE++  S +G
Sbjct:   53 RARILLTSTNPEDIPINGRSLLRRLMKYGILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISIKDQIVDVPGFMVRADKEPLIEYNPYSRYG 170          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_IGNH4 (30S ribosomal protein S4P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4p PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.072e-16
Identity = 47/108 (43.52%), Postives = 73/108 (67.59%), Query Frame = -3
Query:  387 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 710
            R+LL L  +   +  E +ALL+R++  G ++E+   LD VL+LTV + LERRLQT+V+K G+AKSI+HAR L+   HI +  + V  P ++VR D ++ I ++ TSP+
Sbjct:   56 RELLALPAEVREK--EEKALLKRLYDLGLVDENAT-LDDVLSLTVRDLLERRLQTVVYKKGLAKSIYHARQLVTHGHIAINGRRVTSPGYIVRRDEEELIGYAPTSPY 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULAC (30S ribosomal protein S4P OS=Sulfolobus acidocaldarius GN=rps4p PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 1.991e-15
Identity = 47/117 (40.17%), Postives = 72/117 (61.54%), Query Frame = -3
Query:  366 RDLLTLD--EKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGR 710
            R LL L   E+N R     + L+++++R G LE+  + LD +L+LT EN+LERRLQT+V+K G+A++I+ AR LI   HI +  + V  P +VV    +  I++  TSPF    P +
Sbjct:   56 RSLLALPPAERNIRE----KQLIQKLYRMGILEKDNSTLDDILSLTEENYLERRLQTIVYKKGLARTIYQARQLITHGHIAISGRKVTSPGYVVLRGEEDLIDYYPTSPFKQNPPSQ 168          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_STAMF (30S ribosomal protein S4P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 40/91 (43.96%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  387 EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 659
            +ALL R++R G L E+ + L+ VL LTVE+ LERRLQT+V+K G+A++I+HAR LI   HI +  + +  P ++V  + +  ++++ TSPF
Sbjct:   71 KALLNRLYRLGLLHENAS-LEDVLGLTVEDLLERRLQTIVYKKGLARTIYHARQLIIHGHIAIAGRRITSPGYIVSREEEDLVDYAPTSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULTO (30S ribosomal protein S4P OS=Sulfolobus tokodaii GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 40/102 (39.22%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  348 LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKRRNI 653
            L+++++R G +E+    LD +L L  EN+LERRLQT+V+K G+A++I+ AR LI   HI +G + V  P ++V    +  I+F  TSPF    P +    N+
Sbjct:   73 LIQKLYRMGIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTSPGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENV 174          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRHO (30S ribosomal protein S4P OS=Pyrococcus horikoshii GN=rps4p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.883e-15
Identity = 44/93 (47.31%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  387 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 665
            E E LL R+ R G L E    LD VL+LTVE+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   69 EREQLLSRLKRLGLLPEDA-VLDDVLSLTVEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDKITYARTSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRFU (30S ribosomal protein S4P OS=Pyrococcus furiosus GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  387 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 665
            E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRAB (30S ribosomal protein S4P OS=Pyrococcus abyssi GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.686e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  387 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 665
            E E LL R+ R G L E    LD VL+LT+E+ LERRLQT+V+K G+A+++  AR LI   HI V  Q++  PS++V  + +  I ++ TSPF
Sbjct:   69 EREQLLARLKRLGLLPEDA-VLDDVLSLTIEDILERRLQTIVYKKGLARTMRQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDTITYARTSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_THEGJ (30S ribosomal protein S4P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  387 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 665
            E + LL+R+HR G L  +   LD VL+LTVE+ LERRLQTLV+K G+A++I  AR LI   HI V  Q++  P ++V  + +  I ++  SPF
Sbjct:   69 ERQQLLQRLHRLGLLP-ADAALDDVLSLTVEDVLERRLQTLVYKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLREEEDTITYAKNSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METS5 (30S ribosomal protein S4P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 43/113 (38.05%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + LL ++++ G L+  Q+ +D +L L  E+ LERRLQT+V + G+A++I+ AR LI   HI VG + +  P ++V+ D +  I+F  TSPF    P
Sbjct:   56 RSLLALPPAE--RAVREKQLLGKLYKLGLLKSEQSTIDDILGLEEESLLERRLQTIVHRKGLARTIYQARQLIVHGHIAVGGRKITSPGYIVKRDEEDSIDFYPTSPFKNNPP 166          
The following BLAST results are available for this feature:
BLAST of CX077154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RS9_ENCCU4.740e-1743.2240S ribosomal protein S9 OS=Encephalitozoon cunicu... [more]
RS4_IGNH43.072e-1643.5230S ribosomal protein S4P OS=Ignicoccus hospitalis... [more]
RS4_SULAC1.991e-1540.1730S ribosomal protein S4P OS=Sulfolobus acidocalda... [more]
RS4_STAMF5.794e-1543.9630S ribosomal protein S4P OS=Staphylothermus marin... [more]
RS4_SULTO9.883e-1539.2230S ribosomal protein S4P OS=Sulfolobus tokodaii G... [more]
RS4_PYRHO9.883e-1547.3130S ribosomal protein S4P OS=Pyrococcus horikoshii... [more]
RS4_PYRFU1.686e-1446.2430S ribosomal protein S4P OS=Pyrococcus furiosus G... [more]
RS4_PYRAB1.686e-1446.2430S ribosomal protein S4P OS=Pyrococcus abyssi GN=... [more]
RS4_THEGJ2.202e-1446.2430S ribosomal protein S4P OS=Thermococcus gammatol... [more]
RS4_METS52.202e-1438.0530S ribosomal protein S4P OS=Metallosphaera sedula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077154 ID=CX077154; Name=CX077154; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTCCATTAAATCTAATATATATATATGCGCACAAAAAA
GCTAACTACACGGAGATTTAATTTAGGCATAAAAAAGCTTAAGGATCAAA
GAGTACATCCCAAAAAACAAAAACAATTCTCTCAATGAGTAGTCTGTAAA
GCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACA
TAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCT
ACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCA
TCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAAT
GTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGA
GTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGA
ATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCAC
TCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCT
GAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCA
AGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCTCCTGAG
AAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGAGAGTGA
GAAGATCCCTCG
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