CX077154

Overview
NameCX077154
Unique NameCX077154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METKA (30S ribosomal protein S4P OS=Methanopyrus kandleri GN=rps4p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.202e-14
Identity = 40/100 (40.00%), Postives = 67/100 (67.00%), Query Frame = -3
Query:  390 NPRRIFEGEALLRRMHRYGFLEESQNK--LDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 683
            +P    E EAL R+++  G L++   +  LD +L LTVE+ LERRLQT+V++ G+AK+   AR L+  RHI +G ++V +PS++V  + ++ +++S  SP
Sbjct:   63 DPEAQREREALFRKLYDLGILDKKPEEATLDDILRLTVEDVLERRLQTIVYRKGLAKTPLQARQLVVHRHIAIGDRIVTVPSYLVSREEEEEVDYSPYSP 162          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_THESM (30S ribosomal protein S4P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 43/97 (44.33%), Postives = 61/97 (62.89%), Query Frame = -3
Query:  375 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 665
            E   LL+R+ R G L E  + LD VL+LT+++ LERRLQTLVFK G+A++I  AR LI   HI V  Q++  PS++V  + +  I +   SPF   +
Sbjct:   69 ERAQLLQRLARLGILPEGAH-LDDVLSLTIDDILERRLQTLVFKKGLARTIKQARQLIVHGHIEVNGQIIRSPSYLVLKEEEDGITYGRASPFANSQ 164          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_HYPBU (30S ribosomal protein S4P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 41/97 (42.27%), Postives = 64/97 (65.98%), Query Frame = -3
Query:  375 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGR 665
            E +ALL R++  G L E+   LD VL LT E+FLERRLQT+V+K G+A++I+ AR LI   HI +  + +  P ++V+ D +  ++++ TSP+   R
Sbjct:   69 EEKALLARLNELGVLPENAT-LDDVLNLTAEHFLERRLQTIVYKKGLARTIYEARQLIVHGHIAIAGRKIRSPGYLVKKDEEDLVDYAPTSPYAKRR 164          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METJA (30S ribosomal protein S4P OS=Methanocaldococcus jannaschii GN=rps4p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 44/103 (42.72%), Postives = 61/103 (59.22%), Query Frame = -3
Query:  360 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRVK 665
            E   L   + +YG L+     LD VL+LTVE+ LERRLQTLVF+ G+A++   AR LI   HI V  ++V  PS++V V+ +  I ++  SPF     P R K
Sbjct:   70 EAVQLFNVLKKYGILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTAPSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_THEON (30S ribosomal protein S4P OS=Thermococcus onnurineus (strain NA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = -3
Query:  387 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 665
            E   LL+R++R G L  +   LD VL+LTVE+ L+RRLQT+VFK G+A++I  AR LI   HI V  Q++  P ++V  + +  I +S TSPF
Sbjct:   69 ERAQLLQRLNRLGLLP-ADAVLDDVLSLTVEDVLDRRLQTIVFKKGLARTIRQARQLIVHGHIEVNGQIIRSPGYLVLKEEEDTITYSKTSPF 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRKO (30S ribosomal protein S4P OS=Pyrococcus kodakaraensis GN=rps4p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.578e-12
Identity = 42/102 (41.18%), Postives = 65/102 (63.73%), Query Frame = -3
Query:  363 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFG-GGRPGRV 665
            E + LL+R++R G L  +   LD VL+LTVE+ LERRLQT+V++ G+A+++  AR LI   HI V  Q++  P ++V  + +  I ++  SPF   G P R+
Sbjct:   69 ERQQLLQRLYRLGLLP-ADAVLDDVLSLTVEDVLERRLQTIVYRKGLARTMKQARQLIVHGHIEVNGQVIRSPGYLVLREEEDTITYAKGSPFAKEGHPERM 169          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_THEPD (30S ribosomal protein S4P OS=Thermofilum pendens (strain Hrk 5) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = -3
Query:  390 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 710
            R LL L  +   RI   + L+ R+++ G L      LD VL+LTV + LERRLQT+V++ G+A +I HAR LI   HI V  + V  P ++V  D +  I +   SP
Sbjct:   56 RKLLALPAEE--RIKLEKPLVSRLYKMGLLPSEDASLDDVLSLTVRDVLERRLQTIVYRKGLATTIRHARQLITHGHIAVNSRRVRSPGYLVSRDEENFISYYEGSP 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULSO (30S ribosomal protein S4P OS=Sulfolobus solfataricus GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 40/113 (35.40%), Postives = 65/113 (57.52%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + L+ ++ + G L++    +D +L+LT ++ LERRLQT+V+K G++ +I+ AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKKETATVDDILSLTEQDLLERRLQTIVYKKGLSNTIYQARQLITHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRCJ (30S ribosomal protein S4P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  435 LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 701
            +T +E+ P  +        ++++ GF+E+    LD +L+L V   LERRLQTLVF+ G+AKSIHHAR L+   H+ V  + V  P F+V
Sbjct:   63 MTAEERAPLEV----PFKEKLYKMGFIEDPNVPLDRILSLDVRAILERRLQTLVFRMGLAKSIHHARQLVVHGHVLVAGRRVTSPGFLV 147          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METLZ (30S ribosomal protein S4P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps4p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = -3
Query:  357 PRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRPGRVKR 680
            P+ I   + L+  + RYG L      +D +L+L VE+ LERRLQT+V++ G+A+S   AR LI   HI +  Q V++PS++V +  +  I +  TS  G    G  +R
Sbjct:   69 PKTIARRDELVGTLQRYGLLGPDA-AMDNILSLKVEDILERRLQTIVYRKGLARSPKQARQLITHGHIAINGQRVSVPSYMVSIAEEAGIMYYATSSLGDEANGERQR 175          
The following BLAST results are available for this feature:
BLAST of CX077154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RS4_METKA2.202e-1440.0030S ribosomal protein S4P OS=Methanopyrus kandleri... [more]
RS4_THESM3.755e-1444.3330S ribosomal protein S4P OS=Thermococcus sibiricu... [more]
RS4_HYPBU3.755e-1442.2730S ribosomal protein S4P OS=Hyperthermus butylicu... [more]
RS4_METJA4.905e-1442.7230S ribosomal protein S4P OS=Methanocaldococcus ja... [more]
RS4_THEON6.406e-1446.2430S ribosomal protein S4P OS=Thermococcus onnurine... [more]
RS4_PYRKO1.578e-1241.1830S ribosomal protein S4P OS=Pyrococcus kodakaraen... [more]
RS4_THEPD2.061e-1240.1930S ribosomal protein S4P OS=Thermofilum pendens (... [more]
RS4_SULSO3.515e-1235.4030S ribosomal protein S4P OS=Sulfolobus solfataric... [more]
RS4_PYRCJ3.515e-1241.5730S ribosomal protein S4P OS=Pyrobaculum calidifon... [more]
RS4_METLZ3.515e-1237.0430S ribosomal protein S4P OS=Methanocorpusculum la... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077154 ID=CX077154; Name=CX077154; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTCCATTAAATCTAATATATATATATGCGCACAAAAAA
GCTAACTACACGGAGATTTAATTTAGGCATAAAAAAGCTTAAGGATCAAA
GAGTACATCCCAAAAAACAAAAACAATTCTCTCAATGAGTAGTCTGTAAA
GCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACA
TAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCT
ACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCA
TCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAAT
GTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGA
GTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGA
ATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCAC
TCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCT
GAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCA
AGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCTCCTGAG
AAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGAGAGTGA
GAAGATCCCTCG
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