CX077154

Overview
NameCX077154
Unique NameCX077154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULIM (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULIL (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULIK (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_SULIA (30S ribosomal protein S4P OS=Sulfolobus islandicus (strain M.16.27) GN=rps4p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.336e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = -3
Query:  372 RDLLTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPFGGGRP 710
            R LL L      R    + L+ ++ + G L+     +D +L+LT ++ LERRLQT+V+K G+A + + AR LI   HI V  + V  P ++V VD +  I++ +TS F    P
Sbjct:   56 RSLLALPPAE--RAVREKQLVGKLLKMGLLKRETATVDDILSLTEQDLLERRLQTIVYKKGLANTTYQARQLIIHGHIAVNGKRVTSPGYIVNVDEENLIDYYVTSSFKSRPP 166          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METMP (30S ribosomal protein S4P OS=Methanococcus maripaludis GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  390 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 665
            E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+VF+ G+AK+   AR  I   HI V  + V  P++++ V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILIEEEPTLDHVLSLNIESILERRLQTIVFRKGLAKTPKQARQFIVHGHIAVNGKRVTAPAYLISVAENDAIEYVSNSP 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_AERPE (30S ribosomal protein S4P OS=Aeropyrum pernix GN=rps4p PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = -3
Query:  387 LLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSPF 653
            L+  ++R G ++     +D VL +  E  LERRLQT+V+K G+AK+I+ AR L+   HI +  + V  P ++V  + +K I+++  SPF
Sbjct:   73 LVESLYRMGLIDNPNVDIDEVLGINAEKVLERRLQTIVYKKGLAKTIYQARQLVVHGHIAIAGRRVTSPGYLVSREEEKLIDYAPGSPF 161          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_THENV (30S ribosomal protein S4P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 37/89 (41.57%), Postives = 56/89 (62.92%), Query Frame = -3
Query:  435 LTLDEKNPRRIFEGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVV 701
            +T +E+ P  +        ++++ GF+E+    LD VL+L V   LERRLQT+V++ G+AKSI+HAR LI   HI V  + V+ P F+V
Sbjct:   63 MTAEERAPLEL----PFKEKLYKMGFIEDPNVPLDRVLSLDVRAILERRLQTIVYRMGLAKSIYHARQLIVHGHIAVAGRRVSSPGFLV 147          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_METM6 (30S ribosomal protein S4P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 37/92 (40.22%), Postives = 53/92 (57.61%), Query Frame = -3
Query:  390 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 665
            E   L   + RY  L E +  LD+VL+L +E+ LERRLQT+V++ G+AK+   AR  I   HI V  + V  P+++V V     IE+   SP
Sbjct:   69 EAVQLFNVLKRYAILVEQEPTLDHVLSLDIESILERRLQTIVYRKGLAKTAKQARQFIVHGHIAVNGKRVTAPAYLVSVAENDAIEYVPNSP 160          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_PYRIL (30S ribosomal protein S4P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 33/78 (42.31%), Postives = 51/78 (65.38%), Query Frame = -3
Query:  411 RMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHI 644
            ++++ GF+E+    LD +L+L V   LERRLQT+V++ G+AKSI+HAR L+   H+ V  + V  P F+V  D +  I
Sbjct:   78 KLYKMGFIEDPNVPLDRILSLDVRAILERRLQTIVYRKGLAKSIYHARQLVVHGHVAVAGRRVTSPGFLVPRDLEDKI 155          
BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_NANEQ (30S ribosomal protein S4P OS=Nanoarchaeum equitans GN=rps4p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 38/92 (41.30%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  390 EGEALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIEFSLTSP 665
            E E  L ++ + G L E+  +LD VL LTV++ LERRLQT++ + G+AK++  AR  I   HI V  ++V+ PS++V+ + +  IEF   SP
Sbjct:   68 EKERFLTKLKKLGVLSENA-ELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLVKKEEEDKIEFVPFSP 158          
The following BLAST results are available for this feature:
BLAST of CX077154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RS4_SULIM1.336e-1135.4030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIL1.336e-1135.4030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIK1.336e-1135.4030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_SULIA1.336e-1135.4030S ribosomal protein S4P OS=Sulfolobus islandicus... [more]
RS4_METMP1.744e-1140.2230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_AERPE1.744e-1137.0830S ribosomal protein S4P OS=Aeropyrum pernix GN=r... [more]
RS4_THENV2.278e-1141.5730S ribosomal protein S4P OS=Thermoproteus neutrop... [more]
RS4_METM62.278e-1140.2230S ribosomal protein S4P OS=Methanococcus maripal... [more]
RS4_PYRIL3.886e-1142.3130S ribosomal protein S4P OS=Pyrobaculum islandicu... [more]
RS4_NANEQ5.076e-1141.3030S ribosomal protein S4P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077154 ID=CX077154; Name=CX077154; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTCCATTAAATCTAATATATATATATGCGCACAAAAAA
GCTAACTACACGGAGATTTAATTTAGGCATAAAAAAGCTTAAGGATCAAA
GAGTACATCCCAAAAAACAAAAACAATTCTCTCAATGAGTAGTCTGTAAA
GCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACA
TAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCT
ACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCA
TCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAAT
GTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGA
GTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGA
ATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCAC
TCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCT
GAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCA
AGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCTCCTGAG
AAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGAGAGTGA
GAAGATCCCTCG
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