CX077154

Overview
NameCX077154
Unique NameCX077154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077154 vs. ExPASy Swiss-Prot
Match: RS4_KORCO (30S ribosomal protein S4P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps4p PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = -3 
Query:  408 EALLRRMHRYGFLEESQNKLDYVLALTVENFLERRLQTLVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSFVVRVDSQKHIE 659
            E +++++   G L +    LD +L L+VE FLERRLQT+V++ G AKS + AR LI   HIRV  + +  PS++V+++ +  IE
Sbjct:   70 EPIIKKLQALGILSKDAT-LDDLLDLSVEQFLERRLQTIVWRKGFAKSPYMARQLITHGHIRVNGRRIRQPSYLVKIEEEDKIE 152
The following BLAST results are available for this feature:
BLAST of CX077154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
RS4_KORCO8.658e-1141.6730S ribosomal protein S4P OS=Korarchaeum cryptofil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G09-M18-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077154 ID=CX077154; Name=CX077154; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTCCATTAAATCTAATATATATATATGCGCACAAAAAA
GCTAACTACACGGAGATTTAATTTAGGCATAAAAAAGCTTAAGGATCAAA
GAGTACATCCCAAAAAACAAAAACAATTCTCTCAATGAGTAGTCTGTAAA
GCACAAAGCAAGCAAAACCTCCTATTATAGGAAGAAAATTAGCAAAAACA
TAAAACTTAAGAGAAGATAAGTCGATTTGCAAAGTTCAGCCAGAGTTCCT
ACTGTAACCATAAAAAAACTATCTGCTCACACAAGGTAATTTATTCTTCA
TCCTCTTCATCTCCATCTCCACCTGCGGCCTTCTTGGCAGCAGCCTTAAT
GTTCCTTCTCTTCACTCTTCCGGGGCGCCCGCCTCCAAATGGACTTGTGA
GTGAGAATTCAATGTGCTTCTGGGAATCAACCCTCACTACAAATGAGGGA
ATGTTGACAAGCTGCCTTCCAACCCTAATGTGCCTCTGCCTGATGAGCAC
TCGAGCATGGTGAATTGACTTAGCCATGCCACTCTTGAACACAAGGGTCT
GAAGACGACGCTCAAGAAAGTTCTCCACAGTGAGGGCCAACACATAATCA
AGCTTGTTCTGGCTCTCTTCCAAGAAGCCATACCTGTGCATCCTCCTGAG
AAGGGCCTCACCCTCAAAAATACGTCGTGGGTTCTTCTCATCGAGAGTGA
GAAGATCCCTCG
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