CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.463e-76
Identity = 146/236 (61.86%), Postives = 171/236 (72.46%), Query Frame = 3
Query:    3 VDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            VD PGAGKHI+AGAKKV+ITAP KG  I T+VVGVNEKDY H+  +IVSNASCTTNC+APF+KV+D+E G+V+G +TTTHSYTGDQ                  NIVPT+TGAAKAV+LV+P LKGKLNGIALR                KK    E+VN A  KA+EG +KGI+   D PLVS D R +D S+ IDSSLTMVMGDDM+KVVAWYDNEWGYSQRVVDL  ++A +W
Sbjct:  179 VDAPGAGKHIEAGAKKVLITAPGKGDGIGTFVVGVNEKDYSHDKYDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPSLKGKLNGIALRVPTPNVSVCDVVMQVNKKTF-KEEVNGALLKASEGAMKGIIKYSDEPLVSCDHRGTDESTIIDSSLTMVMGDDMIKVVAWYDNEWGYSQRVVDLGEVMARQW 413          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 4.256e-76
Identity = 149/220 (67.73%), Postives = 166/220 (75.45%), Query Frame = 3
Query:    3 VDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWG 662
            +D PGA KHI+AGAKKV+ITAPAKG+DIPTYVVGVN  DY H  A I+SNASCTTNCLAPFVKV+DE+ GIVKG +T THSYTGDQ                  NIVPT+TGAAKAV+LVLP+LKGKLNGIALR               EKK   AE++N AF++AA G L G+LAV D PLVSVDFRC+DVSSTIDSSLTMVMG DMVKVVAWYDNEWG
Sbjct:   97 IDTPGASKHIEAGAKKVLITAPAKGSDIPTYVVGVNAHDYKHSDA-IISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVALVLPKLKGKLNGIALRVPTPNVSVVDLVVQVEKKTF-AEEINNAFKEAAAGSLNGVLAVSDEPLVSVDFRCTDVSSTIDSSLTMVMGADMVKVVAWYDNEWG 314          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.603e-75
Identity = 151/236 (63.98%), Postives = 171/236 (72.46%), Query Frame = 3
Query:    3 VDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            VD  GAGKHIQAGAKKV+ITAP KG DIPTYVVGVN   Y+ +   I+SNASCTTNCLAPFVKV+D++ GI+KG +TTTHSYTGDQ                  NIVPTSTGAAKAV+L    L+G    + LR                KK   AE+VNAAFR+AA+  LKGIL VCD PLVSVDFRCSDVSST+D+SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA +W
Sbjct:  159 VDREGAGKHIQAGAKKVLITAPGKG-DIPTYVVGVNADLYNPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTF-AEEVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQW 391          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 4.404e-73
Identity = 141/236 (59.75%), Postives = 168/236 (71.19%), Query Frame = 3
Query:    3 VDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            VD  GAGKHIQAGAKKV+ITAP KG  + T+VVGVN+  Y H+  +IVSNASCTTNC+APF+KV+D+E G+V+G +TTTHSYTGDQ                  NIVPT+TGAAKAV+LV+P L GKLNGIALR                KK    E+VN A  KAA G +KGI+   D PLVS D+R +D S+ IDSSLTMVMGDDM+KVVAWYDNEWGYSQRVVDL  ++A++W
Sbjct:  181 VDAVGAGKHIQAGAKKVLITAPGKGEGVGTFVVGVNDHLYSHDKFDIVSNASCTTNCMAPFMKVLDDEFGVVRGMMTTTHSYTGDQRLLDAGHRDLRRARSAALNIVPTTTGAAKAVALVVPTLAGKLNGIALRVPTPNVSVCDVVMQVSKKTF-KEEVNGALLKAANGSMKGIIKYSDEPLVSCDYRGTDESTIIDSSLTMVMGDDMLKVVAWYDNEWGYSQRVVDLGEVMASQW 415          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 271.552 bits (693), Expect = 3.728e-72
Identity = 140/232 (60.34%), Postives = 163/232 (70.26%), Query Frame = 3
Query:   15 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            GA KH+QAGAKKV+ITAP KG +I TYVVGVN  +Y HE   ++SNASCTTNCLAPF KV+++  GI+KG +TTTHSYTGDQ                  NIVPTSTGAAKAV+LV+P+L+GKLNGIALR               EK  I AE VN   ++AA   LKG+L   D+ LVS DFR +D SST+D SLTMVMG DMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  106 GATKHVQAGAKKVLITAPGKGPNIGTYVVGVNAHEYKHEEYEVISNASCTTNCLAPFGKVINDNFGIIKGTMTTTHSYTGDQRILDASHRDLRRARAAAVNIVPTSTGAAKAVALVIPELQGKLNGIALRVPTPNVSVVDLVVQVEKNTI-AEQVNGVLKEAANTSLKGVLEYTDLELVSSDFRGTDCSSTVDGSLTMVMGGDMVKVIAWYDNEWGYSQRVVDLAEIVAKNW 336          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.306e-72
Identity = 138/236 (58.47%), Postives = 171/236 (72.46%), Query Frame = 3
Query:    3 VDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            V   GA KHI AGAKKV+ITAP K  D  T+V+GVN  DYDH + NI+SNASCTTNCLAP  KV++++ GI+KG++TTTHSYTGDQ                  NIVPTSTGAAKAV+LV+P+LKGKLNG+ALR               EK+ IT E+VN A + A+EGPLKGIL   ++ LVS D++ +D SS +D++LT+VMG+D+VKV+AWYDNEWGYSQRV+DLA LVA KW
Sbjct:  103 VSKEGATKHINAGAKKVLITAPGKNED-GTFVMGVNHHDYDHNLHNIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTIT-EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 1.085e-71
Identity = 137/232 (59.05%), Postives = 170/232 (73.28%), Query Frame = 3
Query:   15 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 710
            GA KH+ AGAKKV+ITAP K  D  T+V+GVN  DYDH V +I+SNASCTTNCLAP  KV++++ GI+KG++TTTHSYTGDQ                  NIVPTSTGAAKAV+LV+P+LKGKLNG+ALR               EK+ IT E+VN A + A+EGPLKGIL   ++ LVS D++ +D SS +D+SLT+VMG+D+VKV+AWYDNEWGYSQRV+DLA LVA KW
Sbjct:  107 GALKHVNAGAKKVLITAPGKNED-GTFVIGVNHHDYDHNVHHIISNASCTTNCLAPIAKVLNDKFGIIKGSMTTTHSYTGDQRLLDASHRDLRRARAAAINIVPTSTGAAKAVALVIPELKGKLNGVALRVPTPNVSMVDFVVQVEKRTIT-EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVAEKW 336          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 239.965 bits (611), Expect = 1.202e-62
Identity = 129/230 (56.09%), Postives = 160/230 (69.57%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KH++AGAKKVII+APAK  DI T V+GVN+  YD +  +++SNASCTTNCLAPF KV+ E+ GIV+G +TT HSYT DQ                  +I+PT+TGAAKAV+LVLP+LKGKLNG+A+R               EK+ +T E+VNAA + AAEG LKGILA  + PLVS D+  S VSSTID+  TMV+   MVKVV+WYDNE GYS RVVDLA  +A+K
Sbjct:  106 AAKHLEAGAKKVIISAPAKNEDI-TIVMGVNQDKYDPKAHHVISNASCTTNCLAPFAKVLHEQFGIVRGMMTTVHSYTNDQRILDLPHKDLRRARAAAESIIPTTTGAAKAVALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKE-VTVEEVNAALKAAAEGELKGILAYSEEPLVSRDYNGSTVSSTIDALSTMVIDGKMVKVVSWYDNETGYSHRVVDLAAYIASK 333          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 229.565 bits (584), Expect = 1.625e-59
Identity = 125/230 (54.35%), Postives = 154/230 (66.96%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KH++AGAKKVII+APA   DI T V+GVNE  YD    N++SNA CTTNCLAPF KV++++ G+ +G +TT HSYT DQ                  NI+PTSTGAAKAVSLVLP+LKGKLNG A+R               +K+ +T EDVN A ++AAEG LKGIL   + PLVS D+  +  SSTID+  TMVM  +MVKV++WYDNE GYS RVVDLA  +A K
Sbjct:  106 AAKHLEAGAKKVIISAPASDEDI-TIVMGVNEDKYDAANHNVISNAPCTTNCLAPFAKVLNDKFGLKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELDKE-VTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIAAK 333          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P1_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus subtilis GN=gapA PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 2.122e-59
Identity = 126/230 (54.78%), Postives = 155/230 (67.39%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KH++AGAKKVII+APA   DI T V+GVNE  YD    +++SNASCTTNCLAPF KV++++ GI +G +TT HSYT DQ                  NI+PTSTGAAKAVSLVLP+LKGKLNG A+R                ++ +TAE+VNAA ++AAEG LKGIL   + PLVS D+  +  SSTID+  TMVM   MVKV++WYDNE GYS RVVDLA  +A K
Sbjct:  106 AAKHLEAGAKKVIISAPANEEDI-TIVMGVNEDKYDAANHDVISNASCTTNCLAPFAKVLNDKFGIKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELNQE-VTAEEVNAALKEAAEGDLKGILGYSEEPLVSGDYNGNKNSSTIDALSTMVMEGSMVKVISWYDNESGYSNRVVDLAAYIAKK 333          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3PA_CHOCR1.463e-7661.86Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA4.256e-7667.73Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC3.603e-7563.98Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GRAVE4.404e-7359.75Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY33.728e-7260.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP8.306e-7258.47Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANAVT1.085e-7159.05Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_BACST1.202e-6256.09Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_BACME1.625e-5954.35Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P1_BACSU2.122e-5954.78Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
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