CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 224.557 bits (571), Expect = 5.227e-58
Identity = 122/230 (53.04%), Postives = 152/230 (66.09%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KH+    KKVII+APA   DI T V+GVN + YD    N+VSNASCTTNCLAPF KV++E+ G+ +G +TT HSYT DQ                  N++PTSTGAAKAV+LVLP+LKGKLNG A+R               +K+ +T E+VNAAF+ AAEG LKGIL   + PLVS+D+     SSTID+  TMVM  +MVKV++WYDNE GYS RVVDLA  + +K
Sbjct:  105 AEKHLGGSVKKVIISAPASDEDI-TVVMGVNHEQYDAANHNVVSNASCTTNCLAPFAKVLNEKFGVKRGMMTTIHSYTNDQQILDLPHKDLRRARAAAENMIPTSTGAAKAVALVLPELKGKLNGGAVRVPTANVSLVDLVVELDKE-VTVEEVNAAFKAAAEGELKGILGYSEEPLVSIDYNGCTASSTIDALSTMVMEGNMVKVLSWYDNETGYSNRVVDLAAYMTSK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.287e-56
Identity = 120/227 (52.86%), Postives = 147/227 (64.76%), Query Frame = 3
Query:   27 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            HI+AGAKKVI+TAP K  D+ T V+GVNE  +D E   I+SNASCTTNCLAP VKV+DEE GI  G +TT H+YT DQ                  +I+PT+TGAAKA+SLVLP LKGKL+G+ALR                K  +TAE+VN AF++AA+  + G+L   D PLVS D+  +  S+ ID   TMVM D  VKV+AWYDNEWGYS RVVDL   VA +
Sbjct:  109 HIEAGAKKVILTAPGKNEDV-TIVMGVNEDQFDAERHVIISNASCTTNCLAPVVKVLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDL-KTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAAR 333          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.171e-55
Identity = 121/224 (54.02%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   27 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIVKG +TT H+YT DQ                  NIVPTSTGAAKA+ LV+PQLKGKL+G ALR                 +  + +++NAAF+ AAEG LKGIL   D P+VS D      SS  DS LT V+ DD  KVV+WYDNEWGYS R+VDL  LV
Sbjct:  116 HLDAGAKKVIISAPATDEDI-TIVLGVNDDKYDGS-QNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRA-SVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLV 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.171e-55
Identity = 121/224 (54.02%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   27 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIVKG +TT H+YT DQ                  NIVPTSTGAAKA+ LV+PQLKGKL+G ALR                 +  + +++NAAF+ AAEG LKGIL   D P+VS D      SS  DS LT V+ DD  KVV+WYDNEWGYS R+VDL  LV
Sbjct:  116 HLDAGAKKVIISAPATDEDI-TIVLGVNDDKYDGS-QNIISNASCTTNCLAPLAKVLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRA-SVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLV 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 3.171e-55
Identity = 122/224 (54.46%), Postives = 143/224 (63.84%), Query Frame = 3
Query:   27 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            H+ AGAKKVII+APA   DI T V+GVN+  YD    NI+SNASCTTNCLAP  KV+D+E GIV+G +TT H+YT DQ                  NIVPTSTGAAKA+ LV+P LKGKL+G ALR                KK  + ED+NAAF+ AAEG LKGIL   D P+VS D      SS  DS LT V+ D+  KVV+WYDNEWGYS R+VDL  LV
Sbjct:  116 HLDAGAKKVIISAPATDEDI-TVVLGVNDDKYDGS-QNIISNASCTTNCLAPLTKVLDDEFGIVRGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPNLKGKLDGYALRVPIPTGSVTDLTAEL-KKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALV 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.064e-55
Identity = 117/231 (50.65%), Postives = 147/231 (63.64%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAA-EGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KHI  GAKKV+I+APAK  DI T V+GVN+  YD    +++SNASCTTNC+AP  KV+DE  GIVKG +TT H+YT DQ                  NI+PT+TGAAKA +LVLPQLKGKL+GIA+R               +++ +T ++VNAAF+KAA +G LKGIL   +  +VS D      S T DSSLTMV     VK++ WYDNEWGYS R+VDL   V  +
Sbjct:  107 AEKHIAGGAKKVLISAPAKDEDI-TIVMGVNQDKYDPANHHVISNASCTTNCVAPMAKVLDENFGIVKGLMTTVHAYTNDQRILDFPHKDLRRARAAAENIIPTTTGAAKATALVLPQLKGKLDGIAMRVPVPTGSATDLVVELQRE-VTKDEVNAAFKKAADDGDLKGILFYTEDAIVSSDITGDPASCTFDSSLTMVQEGKSVKILGWYDNEWGYSNRLVDLTVFVGNQ 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 4.579e-54
Identity = 118/234 (50.43%), Postives = 146/234 (62.39%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            D   A  H++ GAKKVIITAPAKG DI T V+GVN + YD    +I+SNASCTTN LAP +KV++E  G+ K  +TT HSYT DQ                  NI+PT+TGAAKA +LVLP LKG+ +G+ALR                K+ +TAE+VNAA + AAEGPLKGILA  +  +V  D      SS +D+ LT  +G +MVKV AWYDNEWGY+ RV DL  LV  K
Sbjct:   99 DADKAKAHLEGGAKKVIITAPAKGEDI-TIVMGVNHEAYDPSRHHIISNASCTTNSLAPVMKVLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALL-KREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALG-NMVKVFAWYDNEWGYANRVADLVELVLRK 329          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.597e-52
Identity = 114/224 (50.89%), Postives = 139/224 (62.05%), Query Frame = 3
Query:   27 HIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            H++AGAKKVI++APA   DI T V GVN+  YD    NI+SNASCTTNCLAP  KV+ ++ GIVKG +TT H+YT DQ                  N+VPTSTGAAKA+ LV+P+LKGKL+G ALR                 K ++  ++NA F+ AAEG LKGIL   D P+VS D      SS  DS LT V+     KVV+WYDNEWGYS R+VDL  LV
Sbjct:  116 HLEAGAKKVIVSAPATDPDI-TIVFGVNDDKYDGS-QNIISNASCTTNCLAPLAKVLHDQFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNVVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADL-SKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIA-SQAKVVSWYDNEWGYSNRLVDLVGLV 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.628e-51
Identity = 110/230 (47.83%), Postives = 142/230 (61.74%), Query Frame = 3
Query:    9 GPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            G  A  HI+AGAKKV++T P+KG  +   V GVN+   D E  +I SNASCTTNC+ P  KV++ + GIV G +TT H+ T DQ                  +I+PTSTGAAKA+  VLP+L+GKL+G+ALR               EK+ +TAE+VN AF  A    L+GI+ V   PLVSVDF  +  S+ ID+  TMVM  + VKV+AWYDNEWGYS RVVD+A  +
Sbjct:  103 GDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKE-VTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.628e-51
Identity = 110/230 (47.83%), Postives = 142/230 (61.74%), Query Frame = 3
Query:    9 GPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLV 698
            G  A  HI+AGAKKV++T P+KG  +   V GVN+   D E  +I SNASCTTNC+ P  KV++ + GIV G +TT H+ T DQ                  +I+PTSTGAAKA+  VLP+L+GKL+G+ALR               EK+ +TAE+VN AF  A    L+GI+ V   PLVSVDF  +  S+ ID+  TMVM  + VKV+AWYDNEWGYS RVVD+A  +
Sbjct:  103 GDKAIAHIKAGAKKVLLTGPSKGGHVQMVVKGVNDNQLDIEAFDIFSNASCTTNCIGPVAKVLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKE-VTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAEQI 328          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P1_BACCE5.227e-5853.04Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P2_BACSU1.287e-5652.86Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCTU3.171e-5554.02Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO3.171e-5554.02Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCAV3.171e-5554.46Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_STRCO7.064e-5550.65Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_THEAQ4.579e-5450.43Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P_MYCLE5.597e-5250.89Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_STAAW3.628e-5147.83Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS3.628e-5147.83Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
back to top