CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.600e-49
Identity = 112/241 (46.47%), Postives = 144/241 (59.75%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEG-------PLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            D   A KH+Q GAKKVIITAPAK  DI T V+GVNE+ Y+ +  NI+SNASCTTNCLAP VKV++E  G+ KG + T H+YT DQ                  NIVPT+TGAAKA+  V+P+LKGKL+G A R                K   + E+VN  FR+AA+         LK IL  C+ P+VS D   +  S+  D+ LT V+ D++V + AWYDNEWGYS R+ DL   +A +
Sbjct:  102 DRENASKHLQGGAKKVIITAPAKNPDI-TVVLGVNEEKYNPKEHNIISNASCTTNCLAPCVKVLNEAFGVEKGYMVTVHAYTNDQRLLDLPHKDFRRARAAAINIVPTTTGAAKAIGEVIPELKGKLDGTARRVPVPDGSLIDLTVVVNKAPSSVEEVNEKFREAAQKYRESGKVYLKEILQYCEDPIVSTDIVGNPHSAIFDAPLTQVI-DNLVHIAAWYDNEWGYSCRLRDLVIYLAER 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.435e-49
Identity = 109/232 (46.98%), Postives = 143/232 (61.64%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGAD-IPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H++AGAK+VII+AP+K  + IPT+VVGVN  +Y+ +   IVSNASCTTNCLAP  K++D+  GIV+G +TT H+ T  Q                   NI+P+STGAAKA +LVLPQLKGKL G+A R               E K  + E++ AA + AAEG LKGIL      +VS+DFR    SS  D+   + +  +  KVV+WYDNEWGYS RV+DL   +A+K
Sbjct:  105 AENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNADTDKIVSNASCTTNCLAPIAKILDDNFGIVEGLMTTVHAMTATQPTVDGPSKKDFRGGRGAAQNIIPSSTGAAKAAALVLPQLKGKLTGMAFRVPTPNVSVVDLTFKTE-KATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDLMLTMASK 335          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 107/229 (46.72%), Postives = 141/229 (61.57%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A  H++ GAKKVII+AP+  AD P YV+GVNEK YD     ++SNASCTTNCLAP  KV+++E  I++G +TT HSYT  Q                   NI+P+STGAAKAV  V+P+L GKL G+++R               EK G T E +  A +KAA+GPLKG+LA  +  +VS D   +  SS  D+   + + D  VK+V+WYDNEWGYS+RV+DL   VA
Sbjct:  107 AKAHLKGGAKKVIISAPS--ADAPMYVMGVNEKTYDGS-GMVISNASCTTNCLAPLAKVINDEFKIIEGLMTTVHSYTATQKTVDGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPELNGKLTGMSMRVPTSNVSVVDLTVRIEK-GATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVA 331          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.290e-48
Identity = 103/231 (44.59%), Postives = 140/231 (60.61%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H++ GAKKVII+AP+  AD P +VVGVN + YDH   +I+SNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK   + +D+    + AAEGPLKG+LA  +  +VS DF     SS  D+  ++++  + VK+++WYDNE+GYS RVVDL   +ATK
Sbjct:  113 ANAHLKGGAKKVIISAPS--ADAPMFVVGVNHEKYDHANDHIISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPA-SLDDIKRVIKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIATK 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.685e-48
Identity = 106/229 (46.29%), Postives = 144/229 (62.88%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAE-GPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A  H+ AGAKKV+I+APAKG    T V GVN KD   +   IVSNASCTTNCLAP + V+ +++GIV+G +TT HS+T DQ                  +++PTSTGAA+AV+LV+P+LKGKL+GI++R               ++   TAE++N+  + AA+ G + G+L   D PLVS DF     SST+DS  T V+   + +VVAWYDNEWG+S R+VD A  +A
Sbjct:  108 ASAHLTAGAKKVLISAPAKGDVDRTVVYGVNHKDLTAD-DKIVSNASCTTNCLAPVLHVLQQKIGIVRGLMTTVHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRD-TTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTAAQMA 334          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.685e-48
Identity = 103/231 (44.59%), Postives = 140/231 (60.61%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H++ GAKKVII+AP+  AD P +VVGVN + YDH   +I+SNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK   + +D+    + AAEGPLKG+LA  +  +VS DF     SS  D+  ++++  + VK+++WYDNE+GYS RVVDL   +ATK
Sbjct:  113 ANAHLKGGAKKVIISAPS--ADAPMFVVGVNHEKYDHANDHIISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTARLEKPA-SLDDIKKVVKAAAEGPLKGVLAYTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIATK 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.201e-48
Identity = 111/236 (47.03%), Postives = 142/236 (60.17%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 707
            D   A  H++AGAKKV+I+AP+K  D P +VVGVNE  Y  +V NIVSNASCTTNCLAP  KV++++ GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G+A R               EK   T +++ AA +  +EG LKGIL   +  +VS DF     SS  D+   + + D+ VK+V+WYDNEWGYS RVVDL  H+ AT+
Sbjct:  109 DKEKASAHLKAGAKKVVISAPSK--DAPMFVVGVNEHQYKSDV-NIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKSA-TYDEIKAAIKAESEGNLKGILGYTEDAVVSTDFIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.875e-48
Identity = 109/228 (47.81%), Postives = 139/228 (60.96%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D   A  H++ GAKKVII+AP+K  D P +VVGVNEK+Y  ++ +IVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLPQL GKL G++ R               EKK  T E + AA ++ +EG LKGIL   +  +VS DF     SS  D+   + + D+ VK+V+WYDNEWGYS RVVDL
Sbjct:  106 DKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEKEYKSDL-HIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKKA-TYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.754e-48
Identity = 110/236 (46.61%), Postives = 139/236 (58.90%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 707
            D   A  H++ GAKKV+I+AP+K  D P +VVGVNE  Y  +V NIVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P+STGAAKAV  VLP L GKL G++ R               EK G + ED+  A + A+EGPLKGI+   +  LVS DF     SS  D+   + + D  VK+V+WYDNEWGYS RVVDL  H+  T+
Sbjct:  106 DKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEDKYTSDV-NIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTVRIEK-GASYEDIKKAIKAASEGPLKGIMGYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.754e-48
Identity = 108/231 (46.75%), Postives = 138/231 (59.74%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H+  GAKKVIITAP+   D P YV+GVN + Y+    +I+SNASCTTNCLAP  KV++ + GI +G +TT H+ T  Q                   NI+P+STGAAKAV  VLP+LKGKL G+A R               EK   T ED+  A ++A+EG +KG+LA  D  +VS DF     S T+D+   +++    VK+VAWYDNEWGYS RVVDLA  VA K
Sbjct:  109 ATAHLTGGAKKVIITAPSN--DAPMYVMGVNHEKYNPATDHIISNASCTTNCLAPLAKVVNSKFGIKEGLMTTVHATTATQKTVDGPSKKDWRGGRAVNGNIIPSSTGAAKAVGKVLPELKGKLTGMAFRVPTNDVSVVDLTVTLEK-ATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVAKK 336          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_AQUAE2.600e-4946.47Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3P1_SYNY34.435e-4946.98Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_CRYPA1.290e-4846.72Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3P2_CAEBR1.290e-4844.59Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_ZYMMO1.685e-4846.29Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P3_CAEBR1.685e-4844.59Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3PC_PINSY2.201e-4847.03Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA2.875e-4847.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE3.754e-4846.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CHLRE3.754e-4846.75Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
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