CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_RAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus norvegicus GN=Gapdh PE=1 SV=3)

HSP 1 Score: 188.348 bits (477), Expect = 4.151e-47
Identity = 104/231 (45.02%), Postives = 140/231 (60.61%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++AAEGPLKGIL   +  +VS DF  +  SST D+   + + D+ VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYDDIKKVVKQAAEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 111/230 (48.26%), Postives = 138/230 (60.00%), Query Frame = 3
Query:   15 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            GA KHI AGAKKVIITAP+K  D P +VVGVN ++Y  ++  I+SNASCTTNCLAP  KV+++  GI +G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G+++R                KK  T ED+ A  +KAAEGPL GIL   D  +VS DF     SS  D+   +++    VK+V+WYDNE+GYS RVVDL   VA
Sbjct:  106 GAQKHIDAGAKKVIITAPSK--DAPMFVVGVNHEEYTPDI-KILSNASCTTNCLAPLAKVINDIFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPALAGKLTGMSMRVPTTDVSVVDLTVNL-KKPTTYEDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.421e-47
Identity = 110/235 (46.81%), Postives = 141/235 (60.00%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVAT 704
            D   A  H++ GAKKVII+AP+K  D P +VVGVNE +Y  E+ +IVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G++ R               EK   T E V AA ++ +EG LKGIL   +  +VS DF   + SS  D+   + + D+ +K+V+WYDNEWGYS RVVDL AH+  T
Sbjct:  106 DKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKPEL-DIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPA-TYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDLIAHIHKT 336          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 7.080e-47
Identity = 104/231 (45.02%), Postives = 139/231 (60.17%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN+  YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     ED+    ++A+EGPLKGIL   +  +VS DF     SST D+   + + D+ VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNQDKYDNSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.080e-47
Identity = 103/231 (44.59%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H+Q GAKKVII+AP+  AD P YVVGVN + YD    ++VSNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK   + +D+    + AA+GP+KGILA  +  +VS DF     SS  D+   + +  + VK+V+WYDNE+GYS RVVDL   +AT+
Sbjct:  113 ASAHLQGGAKKVIISAPS--ADAPMYVVGVNHEKYDASNDHVVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPA-SMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 103/231 (44.59%), Postives = 140/231 (60.61%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            AG H++ GAK+VII+AP+  AD P +V+GVN + YD+ +  IVSNASCTTNCLAP  KV+ +  GIV+G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK     +D+    ++A+EGPLKGIL   +  +VS DF  +  SST D+   + + D+ VK+++WYDNE+GYS RVVDL   +A+K
Sbjct:  106 AGAHLKGGAKRVIISAPS--ADAPMFVMGVNHEKYDNSL-KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPA-KYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMASK 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_CANAL (Glyceraldehyde-3-phosphate dehydrogenase OS=Candida albicans GN=TDH1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 107/230 (46.52%), Postives = 139/230 (60.43%), Query Frame = 3
Query:   15 GAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            GA KHI AGAKKVIITAP+  AD P +VVGVNE  Y  ++  I+SNASCTTNCLAP  KV+++  GI +G +TT HS T  Q                   NI+P+STGAAKAV  V+P+L GKL G++LR                KK  + E++  A +KA+EGPLKG+L   +  +VS DF  S  SS  D    +++    VK+++WYDNE+GYS +VVDL   VA
Sbjct:  106 GAQKHIDAGAKKVIITAPS--ADAPMFVVGVNEDKYTPDL-KIISNASCTTNCLAPLAKVVNDTFGIEEGLMTTVHSITATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVIPELNGKLTGMSLRLPTTDVSVVDLTVRL-KKAASYEEIAPAIKKASEGPLKGVLGYTEDAVVSTDFLGSSYSSIFDEKAGILLSPTFVKLISWYDNEYGYSTKVVDLLEHVA 331          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P4_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caenorhabditis elegans GN=gpd-4 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 102/231 (44.16%), Postives = 137/231 (59.31%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A  H+Q GAKKVII+AP+  AD P YVVGVN + YD    +++SNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q                   NI+P STGAAKAV  V+P+L GKL G+A R               EK   + +D+    + AA+GP+KGILA  +  +VS DF     SS  D+   + +  + VK+V+WYDNE+GYS RVVDL   +AT+
Sbjct:  113 ASAHLQGGAKKVIISAPS--ADAPMYVVGVNHEKYDASNDHVISNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAVTATQKTVDGPSGKLWRDGRGAGQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKPA-SMDDIKKVVKAAADGPMKGILAYTEDQVVSTDFVSDPHSSIFDTGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIATR 340          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.247e-47
Identity = 106/229 (46.29%), Postives = 139/229 (60.70%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A  H+  GAKKVII+AP+  AD P YV+GVNE DYD   A+++SNASCTTNCLAP  KV+++  GIV+G +TT HSYT  Q                   NI+P+STGAAKAV  V+P L GKL G+++R               EK G + E++    +KAA+GPLKG+LA     +VS D   +  SS  D    + +  + VK+V+WYDNEWGYS+RV+DL   VA
Sbjct:  108 AKAHLVGGAKKVIISAPS--ADAPMYVMGVNESDYDGS-ADVISNASCTTNCLAPLAKVINDNYGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPALNGKLTGMSIRVPTANVSVVDLTVRIEK-GASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVA 332          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.208e-46
Identity = 112/231 (48.48%), Postives = 142/231 (61.47%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATK 707
            A KH++AGAKKVII+APAK  +I T V+GVN+  YD +  +++SNASCTT CLA F +V+ +  G V   +TT HSYT  Q                   +I+ T+ GAA AV+LVLP+LKGKLNG+A+R                K+ +T E+VNAA +  AEG LKGILA    PLV  ++  S VSSTID   TMV+   MVKVV+WYDNE GYS RVV LA  +  K
Sbjct:  106 AAKHLEAGAKKVIISAPAKVENI-TVVMGVNQDKYDADAHHVISNASCTTICLAAFARVLHQIFGEVSRMMTTAHSYTNIQRILDAATHADLRGARAAAESIIDTTNGAAMAVALVLPELKGKLNGMAMRVATANVSVVDLVYELAKE-VTVEEVNAALKAIAEGELKGILAYSIEPLVIRNYNGSTVSSTIDILSTMVIDGAMVKVVSWYDNETGYSHRVVALAAYINAK 334          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_RAT4.151e-4745.02Glyceraldehyde-3-phosphate dehydrogenase OS=Rattus... [more]
G3P_PICAN5.421e-4748.26Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3PC_DIACA5.421e-4746.81Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_CRIGR7.080e-4745.02Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P1_CAEEL7.080e-4744.59Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_MOUSE9.247e-4744.59Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]
G3P_CANAL9.247e-4746.52Glyceraldehyde-3-phosphate dehydrogenase OS=Candid... [more]
G3P4_CAEEL9.247e-4744.16Glyceraldehyde-3-phosphate dehydrogenase 4 OS=Caen... [more]
G3P2_TRIKO9.247e-4746.29Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_BACCO1.208e-4648.48Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
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