CX077145

Overview
NameCX077145
Unique NameCX077145
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.577e-46
Identity = 106/228 (46.49%), Postives = 138/228 (60.53%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D   A  H++ GAKKVII+AP+K  D P +VVGVNE +Y  E+ NIVSNASCTTNCLAP  KV++++ GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G++ R               EK+  T E + AA ++ +EG +KGIL   +  +VS DF   + SS  D+   + +  + VK+V+WYDNEWGYS RVVDL
Sbjct:  106 DKDKAAAHLKGGAKKVIISAPSK--DAPMFVVGVNEHEYKSEL-NIVSNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEA-TYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDL 329          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.577e-46
Identity = 106/236 (44.92%), Postives = 139/236 (58.90%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 707
            D   A  H++ GAKKV+I+AP+K  D P +VVGVNE  Y  +V NIVSNASCTTNCLAP  KV+++  GI++G +TT H+ T  Q                   NI+P+STGAAKAV  VLP+L GKL G++ R               EK   + +D+  A + A+EG LKGI+   +  LVS DF     SS  D+   + + D  VK+V+WYDNEWGYS RVVDL  H+  T+
Sbjct:  106 DKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEDKYTSDV-NIVSNASCTTNCLAPLAKVINDNFGIIEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMSFRVPTVDVSVVDLTVRTEKAA-SYDDIKKAIKAASEGKLKGIMGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.577e-46
Identity = 104/224 (46.43%), Postives = 134/224 (59.82%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            A  HI +GA++V++TAP+   D P +V+GVNEKDY+     IVSNASCTTNCLAP  KV+ E  GIV+G +TT HSYT  Q                   NI+P+STGAAKAV  V+P+LKGKL G+A R                K   +   +  A + AA+GPL GILA  +  +VS DF  +  SS  D+   + + D+ VK+VAWYDNE+GYS RVVDL
Sbjct:  211 ASAHISSGARRVVVTAPSP--DAPMFVMGVNEKDYNPGSMTIVSNASCTTNCLAPLAKVIHENFGIVEGLMTTVHSYTATQKTVDGPSKKDWRGGRGAHQNIIPSSTGAAKAVGKVIPELKGKLTGMAFRVPTPNVSVVDLTCRLAKPA-SYSAITEAVKAAAKGPLAGILAYTEDQVVSTDFNGNPHSSIFDAKAGIALNDNFVKLVAWYDNEYGYSNRVVDL 431          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 103/229 (44.98%), Postives = 138/229 (60.26%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A  H++ GAKKVII+AP+  AD P YV+GVN + YD   AN++SNASCTTNCLAP  KV+ +   IV+G +TT HSYT  Q                   NI+P+STGAAKAV  V+P L GKL G+++R               EK G + +++    +KA+EGPL GILA  +  +VS D   +  SS  D+   + +  + VK+V+WYDNEWGYS+RV+DL   VA
Sbjct:  107 ASAHLKGGAKKVIISAPS--ADAPMYVMGVNNESYDGS-ANVISNASCTTNCLAPLAKVIHDNFTIVEGLMTTVHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTANVSVVDLTVRIEK-GASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVA 331          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 110/229 (48.03%), Postives = 138/229 (60.26%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A KHI AGAKKV+ITAP+  A  P +V+GVNE+ Y  E   IVSNASCTTNCLAP  KV+DE+ GI +G +TT HS T  Q                   NI+P+STGAAKAV  VLPQL GKL G+A R                K+  T +++ AA + A+EG LKGIL   +  +VS DF   + SS  D+S  +++    VK+V+WYDNE+GYS RVVDL   VA
Sbjct:  106 AQKHIDAGAKKVVITAPSSTA--PMFVMGVNEEKYAGET--IVSNASCTTNCLAPLAKVIDEQFGIEEGLMTTVHSLTATQKTVDGPSMKDWRGGRTASGNIIPSSTGAAKAVGKVLPQLNGKLTGMAFRVPTVDVSVVDLTVKLNKE-TTYDEIKAAIKAASEGKLKGILGYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 105/228 (46.05%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D   A  H++ GAKKV+I+AP+K  D P +VVGVNEK+Y  E  +IVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLP L GKL G+A R               EK+  + +D+ AA ++ +EG LKGIL   +  +VS DF     SS  D+   + +  + VK+V+WYDNEWGYS RV+DL
Sbjct:   95 DKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEKEYKPEY-DIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSLTATQKTVDGPSMKDWRGGRATSFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKEA-SYDDIKAAIKEESEGKLKGILGFTEDDVVSTDFVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDL 318          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 104/228 (45.61%), Postives = 138/228 (60.53%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D   A  H++ GAKKV+I+AP+K  D P +VVGVNE +Y  ++ NIVSNASCTTNCLAP  KV+++  GIV+G +TT HS T  Q                   NI+P+STGAAKAV  VLPQL GKL G++ R               EK   T +++  A ++ ++G LKGIL   +  +VS DF   + SS  D+   + + D+ VK+V+WYDNEWGYS RVVDL
Sbjct:  108 DKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSDL-NIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPQLNGKLTGMSFRVPTVDVSVVDLTVRLEKAA-TYDEIKKAIKEESQGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDL 331          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 106/232 (45.69%), Postives = 140/232 (60.34%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL-AHLVATK 707
            A  H++ GAKKV+I+AP+  AD P +VVGVN  +Y  ++ +IVSNASCTTNCLAP  KV+++  GIV+G +TT H+ T  Q                   NI+P+STGAAKAV  VLP L GKL G+A R               EKK  T  D+ AA ++ +EG LKGIL   +  +VS DF   + SS  D+   + + D+ VK+V+WYDNEWGYS RVVDL  H+  T+
Sbjct:  111 ASAHLKGGAKKVVISAPS--ADAPMFVVGVNHTEYKSDI-DIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVGLTVRLEKKA-TYADIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.060e-46
Identity = 106/228 (46.49%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 DGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDL 686
            D   A  H++ GAKKV+I+AP+K  D P +VVGVNE +Y  ++ NIVSNASCTTNCLAP  KV+++  GIV+G +TT H+ T  Q                   NI+P+STGAAKAV  VLP L GKL G+A R               EK   + E + AA ++ +EG LKGIL   +  LVS DF   + SS  D+   + + D+ VK+V+WYDNEWGYS RVVDL
Sbjct:  106 DKDKAAAHLKGGAKKVVISAPSK--DAPMFVVGVNEHEYKSDL-NIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAMTATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTCDVSVVDLTVRIEKAA-SYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX077145 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.691e-46
Identity = 103/229 (44.98%), Postives = 140/229 (61.14%), Query Frame = 3
Query:   18 AGKHIQAGAKKVIITAPAKGADIPTYVVGVNEKDYDHEVANIVSNASCTTNCLAPFVKVMDEELGIVKGAITTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTGAAKAVSLVLPQLKGKLNGIALRXXXXXXXXXXXXXXXEKKGITAEDVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA 701
            A  H+Q GAKKVII+AP+  AD P YV+GVNEK YD     ++S ASCTTNCLAP  KV++++  I++G +TT HSYT  Q                   NI+P+STGA KAV  V+P+L GKL G+++R               EK G T +++  A ++AAEGPLKG+LA  +   VS D   +  SS  D+   + + ++ VK+V+WYDNEWGYS+RV+DL   VA
Sbjct:  108 AKAHLQGGAKKVIISAPS--ADAPMYVMGVNEKSYDGSA--VISQASCTTNCLAPLAKVINDKYTIIEGLMTTVHSYTATQKTVDGPSAKDWRGGRTAAQNIIPSSTGAPKAVGKVIPELNGKLTGMSMRVPTANVSVVDLTVRIEK-GATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVA 331          
The following BLAST results are available for this feature:
BLAST of CX077145 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 349
Match NameE-valueIdentityDescription
G3P_ATRNU1.577e-4646.49Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PX_HORVU1.577e-4644.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PT_MOUSE1.577e-4646.43Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_SORMA2.060e-4644.98Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_ASHGO2.060e-4648.03Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3PC_TOBAC2.060e-4646.05Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL2.060e-4645.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC2.060e-4645.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR2.060e-4646.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COLLN2.691e-4644.98Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_54G05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54G05-M10-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077145 ID=CX077145; Name=CX077145; organism=Citrus sinensis; type=EST; length=807bp
TTGTGGACGGCCCTGGTGCTGGAAAGCACATCCAAGCTGGTGCCAAGAAA
GTTATTATCACTGCTCCAGCAAAAGGTGCAGACATTCCAACCTATGTCGT
TGGAGTTAACGAGAAGGATTACGATCACGAGGTTGCAAACATTGTGAGCA
ATGCTTCTTGCACCACAAACTGTTTGGCTCCTTTTGTGAAGGTCATGGAT
GAAGAATTGGGGATTGTCAAGGGAGCGATTACAACTACTCACTCCTACAC
TGGAGACCAGAGGCTCTTGGATGCTTCACACAGGGACTTGAGGAGAGCGA
GAGCTGCAGCGTTGAACATTGTCCCAACGAGCACAGGTGCCGCCAAGGCT
GTTTCTCTTGTGCTGCCACAGCTCAAAGGCAAGCTCAACGGCATTGCGCT
CCGTGTGCCAACACCAAATGTTTCAGTCGTTGACCTTGTTGTGAACGTTG
AGAAAAAGGGTATTACAGCAGAAGATGTTAATGCAGCCTTCAGAAAGGCT
GCTGAGGGGCCACTGAAGGGCATATTGGCCGTCTGCGATGTTCCACTGGT
GTCGGTGGACTTCCGATGCTCTGATGTTTCCTCCACCATTGACTCTTCAT
TGACCATGGTCATGGGTGATGATATGGTCAAGGTTGTTGCCTGGTACGAC
AATGAATGGGGATACAGCCAAAGGGTTGTCGATTTGGCGCATTTGGTTGC
AACCAAGTGGCCAGGCGTGGCTGCAGGCGGAAGCGGAGACCCATTGGAGG
ATTTCTGCCAGACAAACCCTGCTGATGAGGAGTGCAAAGTTTATGAAGCT
TAAATTC
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